Gene name: RAD10
Reference locus (S288C): YML095C
Gene biotype: protein_coding
Description: DNA repair protein RAD10; Single-stranded DNA endonuclease (with Rad1p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human ERCC1 protein; Belongs to the ERCC1/RAD10/SWI10 family
Top 10 interactors (score): RAD1 (0.999); MUS81 (0.999); RAD14 (0.999); RAD2 (0.999); MSH2 (0.997); RAD3 (0.996); RAD4 (0.995); RAD23 (0.992); MSH3 (0.989); MSH6 (0.987); SAW1 (0.984); MPH1 (0.981); RAD52 (0.979); SSL2 (0.978); APN1 (0.968); SLX1 (0.966); PMS1 (0.965); RAD7 (0.96); SSL1 (0.957); RAD16 (0.955)
Homologues (species, bitscore): ERCC1 (Homo sapiens, 77.0); Ercc1 (Mus musculus, 76.3); ercc1 (Danio rerio, 67.0); ercc1 (Xenopus tropicalis, 63.5); Ercc1 (Drosophila melanogaster, 67.4); ERCC1 (Arabidopsis thaliana, 68.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:75203-75835:- | gene-YML095C_AKU4011 | rna-NM_001182454.1_AKU4011 | cds-NP_013614.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:400294-400926:+ | gene-YML095C_BG1 | rna-NM_001182454.1_BG1 | cds-NP_013614.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:81457-82089:- | gene-YML095C_Bruggeman | rna-NM_001182454.1_Bruggeman | cds-NP_013614.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:83015-83647:- | gene-YML095C_CAT1 | rna-NM_001182454.1_CAT1 | cds-NP_013614.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:75204-75836:- | gene-YML095C_CBS1585 | rna-NM_001182454.1_CBS1585 | cds-NP_013614.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:81196-81828:- | gene-YML095C_CBS436 | rna-NM_001182454.1_CBS436 | cds-NP_013614.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:75968-76600:- | gene-YML095C_CBS6412 | rna-NM_001182454.1_CBS6412 | cds-NP_013614.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:74432-75064:- | gene-YML095C_CBS6413 | rna-NM_001182454.1_CBS6413 | cds-NP_013614.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:76071-76703:- | gene-YML095C_CENPK1137D | rna-NM_001182454.1_CENPK1137D | cds-NP_013614.1_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:75708-76340:- | gene-YML095C_EthanolRed | rna-NM_001182454.1_EthanolRed | cds-NP_013614.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:75985-76617:- | gene-YML095C_FaliES1 | rna-NM_001182454.1_FaliES1 | cds-NP_013614.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000345.1:13565-14197:+ | gene-YML095C_JAY291 | rna-NM_001182454.1_JAY291 | cds-NP_013614.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:79902-80534:- | gene-YML095C_MUCL30387 | rna-NM_001182454.1_MUCL30387 | cds-NP_013614.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:83126-83758:- | gene-YML095C_MUCL30388 | rna-NM_001182454.1_MUCL30388 | cds-NP_013614.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:75218-75850:- | gene-YML095C_MUCL39482 | rna-NM_001182454.1_MUCL39482 | cds-NP_013614.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:80016-80648:- | gene-YML095C_MUCL42920 | rna-NM_001182454.1_MUCL42920 | cds-NP_013614.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:81435-82067:- | gene-YML095C_NCIM3186 | rna-NM_001182454.1_NCIM3186 | cds-NP_013614.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:76012-76644:- | gene-YML095C_NCYC1407 | rna-NM_001182454.1_NCYC1407 | cds-NP_013614.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:81445-82077:- | gene-YML095C_PE2H3 | rna-NM_001182454.1_PE2H3 | cds-NP_013614.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:81383-82015:- | gene-YML095C_PE2H4 | rna-NM_001182454.1_PE2H4 | cds-NP_013614.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:81481-82113:- | gene-YML095C_S288C | rna-NM_001182454.1_S288C | cds-NP_013614.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000054.1:73449-74081:- | gene-YML095C_SA1 | rna-NM_001182454.1_SA1 | cds-NP_013614.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:75281-75913:- | gene-YML095C_ThermosaccDry | rna-NM_001182454.1_ThermosaccDry | cds-NP_013614.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:79664-80296:- | gene-YML095C_VR1 | rna-NM_001182454.1_VR1 | cds-NP_013614.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:54782-55414:- | gene-YML095C_ZTW1 | rna-NM_001182454.1_ZTW1 | cds-NP_013614.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:86062-86709:- | gene-YML095C_Sparadoxus | rna-NM_001182454.1_Sparadoxus | cds-NP_013614.1_Sparadoxus | 87.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |