Gene name: RAD1
Reference locus (S288C): YPL022W
Gene biotype: protein_coding
Description: Single-stranded DNA endonuclease (with Rad10p); cleaves single-stranded DNA during nucleotide excision repair and double-strand break repair; subunit of Nucleotide Excision Repair Factor 1 (NEF1); homolog of human XPF protein
Top 10 interactors (score): RAD10 (0.999); SGS1 (0.999); RFA1 (0.999); RAD14 (0.999); SSL2 (0.999); TOP3 (0.999); MSH6 (0.998); RAD2 (0.998); RAD27 (0.997); RAD52 (0.997); MSH2 (0.997); RMI1 (0.996); MUS81 (0.995); RAD4 (0.994); RAD51 (0.994); RAD3 (0.991); RAD9 (0.987); APN2 (0.984); REV3 (0.981); MSH3 (0.981)
Homologues (species, bitscore): ERCC4 (Homo sapiens, 406.0); Ercc4 (Mus musculus, 398.3); ercc4 (Danio rerio, 399.4); ercc4 (Xenopus tropicalis, 353.6); mei-9 (Drosophila melanogaster, 355.1); C47D12.8 (Caenorhabditis elegans, 190.7); UVH1 (Arabidopsis thaliana, 350.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:478187-481489:+ | gene-YPL022W_AKU4011 | rna-NM_001183836.1_AKU4011 | cds-NP_015303.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:415857-419159:- | gene-YPL022W_BG1 | rna-NM_001183836.1_BG1 | cds-NP_015303.1_BG1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:555136-558438:+ | gene-YPL022W_Bruggeman | rna-NM_001183836.1_Bruggeman | cds-NP_015303.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:594800-598102:+ | gene-YPL022W_CAT1 | rna-NM_001183836.1_CAT1 | cds-NP_015303.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:482257-485559:+ | gene-YPL022W_CBS1585 | rna-NM_001183836.1_CBS1585 | cds-NP_015303.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:496386-499688:+ | gene-YPL022W_CBS436 | rna-NM_001183836.1_CBS436 | cds-NP_015303.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:486450-489752:+ | gene-YPL022W_CBS6412 | rna-NM_001183836.1_CBS6412 | cds-NP_015303.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:478810-482112:+ | gene-YPL022W_CBS6413 | rna-NM_001183836.1_CBS6413 | cds-NP_015303.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:506671-509973:+ | gene-YPL022W_CENPK1137D | rna-NM_001183836.1_CENPK1137D | cds-NP_015303.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:476550-479852:+ | gene-YPL022W_EthanolRed | rna-NM_001183836.1_EthanolRed | cds-NP_015303.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:484380-487682:+ | gene-YPL022W_FaliES1 | rna-NM_001183836.1_FaliES1 | cds-NP_015303.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000283.1:92982-96284:+ | gene-YPL022W_JAY291 | rna-NM_001183836.1_JAY291 | cds-NP_015303.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:496084-499386:+ | gene-YPL022W_MUCL30387 | rna-NM_001183836.1_MUCL30387 | cds-NP_015303.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:495192-498494:+ | gene-YPL022W_MUCL30388 | rna-NM_001183836.1_MUCL30388 | cds-NP_015303.1_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:475574-478876:+ | gene-YPL022W_MUCL39482 | rna-NM_001183836.1_MUCL39482 | cds-NP_015303.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:534704-538006:+ | gene-YPL022W_MUCL42920 | rna-NM_001183836.1_MUCL42920 | cds-NP_015303.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:506680-509982:+ | gene-YPL022W_NCIM3186 | rna-NM_001183836.1_NCIM3186 | cds-NP_015303.1_NCIM3186 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:482853-486155:+ | gene-YPL022W_NCYC1407 | rna-NM_001183836.1_NCYC1407 | cds-NP_015303.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:489510-492812:+ | gene-YPL022W_PE2H3 | rna-NM_001183836.1_PE2H3 | cds-NP_015303.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:489125-492427:+ | gene-YPL022W_PE2H4 | rna-NM_001183836.1_PE2H4 | cds-NP_015303.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:506697-509999:+ | gene-YPL022W_S288C | rna-NM_001183836.1_S288C | cds-NP_015303.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000076.1:3375-6677:+ | gene-YPL022W_SA1 | rna-NM_001183836.1_SA1 | cds-NP_015303.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:484179-487481:+ | gene-YPL022W_ThermosaccDry | rna-NM_001183836.1_ThermosaccDry | cds-NP_015303.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:499067-502369:+ | gene-YPL022W_VR1 | rna-NM_001183836.1_VR1 | cds-NP_015303.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:483469-486771:+ | gene-YPL022W_ZTW1 | rna-NM_001183836.1_ZTW1 | cds-NP_015303.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:483409-486732:+ | gene-YPL022W_Sparadoxus | rna-NM_001183836.1_Sparadoxus | cds-NP_015303.1_Sparadoxus | 88.8 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |