Gene name: PZF1
Reference locus (S288C): YPR186C
Gene biotype: protein_coding
Description: Transcription factor IIIA (TFIIIA); essential DNA binding protein required for transcription of 5S rRNA by RNA polymerase III; not involved in transcription of other RNAP III genes; nine conserved zinc fingers; may also bind 5S rRNA
Top 10 interactors (score): TFC4 (0.953); BDP1 (0.928); TFC1 (0.92); RPO31 (0.919); TFC3 (0.909); BRF1 (0.909); SPT15 (0.907); RPC82 (0.892); RPO26 (0.88); RPC53 (0.854); RET1 (0.825); SUA7 (0.823); RPC25 (0.823); RPC34 (0.804); RPB8 (0.795); RPC10 (0.79); RPC19 (0.774); YJR012C (0.747); YOR114W (0.745); RPB5 (0.732)
Homologues (species, bitscore): ZNF710 (Homo sapiens, 113.6); Zfp710 (Mus musculus, 114.0); znf366 (Danio rerio, 117.9); znf710 (Xenopus tropicalis, 117.1); CG5245 (Drosophila melanogaster, 94.0); ztf-16 (Caenorhabditis elegans, 82.8); YY1 (Arabidopsis thaliana, 80.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:864017-865306:- | gene-YPR186C_AKU4011 | rna-NM_001184283.1_AKU4011 | cds-NP_015512.1_AKU4011 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:32415-33704:+ | gene-YPR186C_BG1 | rna-NM_001184283.1_BG1 | cds-NP_015512.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:945292-946581:- | gene-YPR186C_Bruggeman | rna-NM_001184283.1_Bruggeman | cds-NP_015512.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:987347-988636:- | gene-YPR186C_CAT1 | rna-NM_001184283.1_CAT1 | cds-NP_015512.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:868818-870107:- | gene-YPR186C_CBS1585 | rna-NM_001184283.1_CBS1585 | cds-NP_015512.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:882354-883643:- | gene-YPR186C_CBS436 | rna-NM_001184283.1_CBS436 | cds-NP_015512.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:870601-871890:- | gene-YPR186C_CBS6412 | rna-NM_001184283.1_CBS6412 | cds-NP_015512.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:865746-867035:- | gene-YPR186C_CBS6413 | rna-NM_001184283.1_CBS6413 | cds-NP_015512.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:909808-911097:- | gene-YPR186C_CENPK1137D | rna-NM_001184283.1_CENPK1137D | cds-NP_015512.1_CENPK1137D | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1185770-1187059:- | gene-YPR186C_EthanolRed | rna-NM_001184283.1_EthanolRed | cds-NP_015512.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:865843-867132:- | gene-YPR186C_FaliES1 | rna-NM_001184283.1_FaliES1 | cds-NP_015512.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:53137-54426:- | gene-YPR186C_JAY291 | rna-NM_001184283.1_JAY291 | cds-NP_015512.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:912522-913811:- | gene-YPR186C_MUCL30387 | rna-NM_001184283.1_MUCL30387 | cds-NP_015512.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:886654-887943:- | gene-YPR186C_MUCL30388 | rna-NM_001184283.1_MUCL30388 | cds-NP_015512.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:861019-862308:- | gene-YPR186C_MUCL39482 | rna-NM_001184283.1_MUCL39482 | cds-NP_015512.1_MUCL39482 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:925481-926770:- | gene-YPR186C_MUCL42920 | rna-NM_001184283.1_MUCL42920 | cds-NP_015512.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:909716-911005:- | gene-YPR186C_NCIM3186 | rna-NM_001184283.1_NCIM3186 | cds-NP_015512.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:869380-870669:- | gene-YPR186C_NCYC1407 | rna-NM_001184283.1_NCYC1407 | cds-NP_015512.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:881663-882952:- | gene-YPR186C_PE2H3 | rna-NM_001184283.1_PE2H3 | cds-NP_015512.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:881311-882600:- | gene-YPR186C_PE2H4 | rna-NM_001184283.1_PE2H4 | cds-NP_015512.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:909733-911022:- | gene-YPR186C_S288C | rna-NM_001184283.1_S288C | cds-NP_015512.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:14789-16078:+ | gene-YPR186C_SA1 | rna-NM_001184283.1_SA1 | cds-NP_015512.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:865531-866820:- | gene-YPR186C_ThermosaccDry | rna-NM_001184283.1_ThermosaccDry | cds-NP_015512.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:893316-894605:- | gene-YPR186C_VR1 | rna-NM_001184283.1_VR1 | cds-NP_015512.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:868077-869367:- | gene-YPR186C_ZTW1 | rna-NM_001184283.1_ZTW1 | cds-NP_015512.1_ZTW1 | 99.0 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:870115-871404:- | gene-YPR186C_Sparadoxus | rna-NM_001184283.1_Sparadoxus | cds-NP_015512.1_Sparadoxus | 88.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |