Gene name: PXP1
Reference locus (S288C): YEL020C
Gene biotype: protein_coding
Description: Putative 2-hydroxyacyl-CoA lyase; Peroxisomal matrix protein; well-conserved in fungi; contains tripartite homology domain of thiamine pyrophosphate (TPP) enzymes; targeted to peroxisomes by Pex5p; contains low sequence identity with Pdc1p; mRNA identified as translated by ribosome profiling data
Top 10 interactors (score): PCS60 (0.964); SPS19 (0.961); STE23 (0.955); POX1 (0.938); CTT1 (0.934); TES1 (0.931); CAT2 (0.924); FOX2 (0.915); FMS1 (0.915); IDP2 (0.912); PEX5 (0.905); PCD1 (0.903); NCP1 (0.901); FAT1 (0.9); DUR1,2 (0.892); YIL089W (0.844); YGR168C (0.844); YBL039W-B (0.844); PEX13 (0.831); ILV6 (0.828)
Homologues (species, bitscore): HACL1 (Homo sapiens, 381.7); Hacl1 (Mus musculus, 370.5); hacl1 (Danio rerio, 359.4); hacl1 (Xenopus tropicalis, 372.1); CG11208 (Drosophila melanogaster, 386.7); B0334.3 (Caenorhabditis elegans, 337.0); AT5G17380 (Arabidopsis thaliana, 355.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:112648-114330:- | gene-YEL020C_AKU4011 | rna-NM_001178835.1_AKU4011 | cds-NP_010895.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:311638-313320:+ | gene-YEL020C_BG1 | rna-NM_001178835.1_BG1 | cds-NP_010895.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:119176-120858:- | gene-YEL020C_Bruggeman | rna-NM_001178835.1_Bruggeman | cds-NP_010895.1_Bruggeman | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:114829-116511:- | gene-YEL020C_CAT1 | rna-NM_001178835.1_CAT1 | cds-NP_010895.1_CAT1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:112590-114272:- | gene-YEL020C_CBS1585 | rna-NM_001178835.1_CBS1585 | cds-NP_010895.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:114223-115905:- | gene-YEL020C_CBS436 | rna-NM_001178835.1_CBS436 | cds-NP_010895.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:112868-114550:- | gene-YEL020C_CBS6412 | rna-NM_001178835.1_CBS6412 | cds-NP_010895.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:117475-119157:- | gene-YEL020C_CBS6413 | rna-NM_001178835.1_CBS6413 | cds-NP_010895.1_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:116475-118157:- | gene-YEL020C_CENPK1137D | rna-NM_001178835.1_CENPK1137D | cds-NP_010895.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:112969-114651:- | gene-YEL020C_EthanolRed | rna-NM_001178835.1_EthanolRed | cds-NP_010895.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:113228-114910:- | gene-YEL020C_FaliES1 | rna-NM_001178835.1_FaliES1 | cds-NP_010895.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000398.1:32114-33796:- | gene-YEL020C_JAY291 | rna-NM_001178835.1_JAY291 | cds-NP_010895.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:116896-118578:- | gene-YEL020C_MUCL30387 | rna-NM_001178835.1_MUCL30387 | cds-NP_010895.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:112867-114549:- | gene-YEL020C_MUCL30388 | rna-NM_001178835.1_MUCL30388 | cds-NP_010895.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:111952-113634:- | gene-YEL020C_MUCL39482 | rna-NM_001178835.1_MUCL39482 | cds-NP_010895.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:116582-118264:- | gene-YEL020C_MUCL42920 | rna-NM_001178835.1_MUCL42920 | cds-NP_010895.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:118616-120298:- | gene-YEL020C_NCIM3186 | rna-NM_001178835.1_NCIM3186 | cds-NP_010895.1_NCIM3186 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:117057-118739:- | gene-YEL020C_NCYC1407 | rna-NM_001178835.1_NCYC1407 | cds-NP_010895.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:121081-122763:- | gene-YEL020C_PE2H3 | rna-NM_001178835.1_PE2H3 | cds-NP_010895.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:116996-118678:- | gene-YEL020C_PE2H4 | rna-NM_001178835.1_PE2H4 | cds-NP_010895.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:118617-120299:- | gene-YEL020C_S288C | rna-NM_001178835.1_S288C | cds-NP_010895.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000020.1:122921-124603:+ | gene-YEL020C_SA1 | rna-NM_001178835.1_SA1 | cds-NP_010895.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:113633-115315:- | gene-YEL020C_ThermosaccDry | rna-NM_001178835.1_ThermosaccDry | cds-NP_010895.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:113173-114855:- | gene-YEL020C_VR1 | rna-NM_001178835.1_VR1 | cds-NP_010895.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:111995-113677:- | gene-YEL020C_ZTW1 | rna-NM_001178835.1_ZTW1 | cds-NP_010895.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:115454-117137:- | gene-YEL020C_Sparadoxus | rna-NM_001178835.1_Sparadoxus | cds-NP_010895.1_Sparadoxus | 88.4 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |