Gene name: PXL1
Reference locus (S288C): YKR090W
Gene biotype: protein_coding
Description: Paxillin-like protein 1; Protein that localizes to sites of polarized growth; required for selection and/or maintenance of polarized growth sites, may modulate signaling by the GTPases Cdc42p and Rho1p; contains LIM domains and has similarity to metazoan paxillin; relocalizes from bud neck to cytoplasm upon DNA replication stress
Top 10 interactors (score): HOF1 (0.915); CYK3 (0.915); RHO1 (0.911); MYO1 (0.846); CDC42 (0.822); RGA2 (0.815); RGA1 (0.814); TEP1 (0.8); ACT1 (0.754); FKS1 (0.75); IQG1 (0.739); SAC6 (0.728); RHO2 (0.714); PFY1 (0.706); TPM1 (0.684); MYO2 (0.682); RGD2 (0.656); AIM44 (0.656); TPM2 (0.65); YGL242C (0.64)
Homologues (species, bitscore): LHX8 (Homo sapiens, 67.4); Lhx8 (Mus musculus, 66.6); lhx8a (Danio rerio, 63.5); lhx8 (Xenopus tropicalis, 63.9); Zasp52 (Drosophila melanogaster, 58.9); pxl-1 (Caenorhabditis elegans, 58.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:594977-597097:+ | gene-YKR090W_AKU4011 | rna-NM_001179880.4_AKU4011 | cds-NP_013016.4_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:47128-49248:- | gene-YKR090W_BG1 | rna-NM_001179880.4_BG1 | cds-NP_013016.4_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:617555-619675:+ | gene-YKR090W_Bruggeman | rna-NM_001179880.4_Bruggeman | cds-NP_013016.4_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:613476-615596:+ | gene-YKR090W_CAT1 | rna-NM_001179880.4_CAT1 | cds-NP_013016.4_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:607464-609584:+ | gene-YKR090W_CBS1585 | rna-NM_001179880.4_CBS1585 | cds-NP_013016.4_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:605849-607969:+ | gene-YKR090W_CBS436 | rna-NM_001179880.4_CBS436 | cds-NP_013016.4_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:590752-592872:+ | gene-YKR090W_CBS6412 | rna-NM_001179880.4_CBS6412 | cds-NP_013016.4_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:607282-609402:+ | gene-YKR090W_CBS6413 | rna-NM_001179880.4_CBS6413 | cds-NP_013016.4_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:608601-610721:+ | gene-YKR090W_CENPK1137D | rna-NM_001179880.4_CENPK1137D | cds-NP_013016.4_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:604788-606908:+ | gene-YKR090W_EthanolRed | rna-NM_001179880.4_EthanolRed | cds-NP_013016.4_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:608683-610803:+ | gene-YKR090W_FaliES1 | rna-NM_001179880.4_FaliES1 | cds-NP_013016.4_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000426.1:34130-36250:- | gene-YKR090W_JAY291 | rna-NM_001179880.4_JAY291 | cds-NP_013016.4_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:617050-619170:+ | gene-YKR090W_MUCL30387 | rna-NM_001179880.4_MUCL30387 | cds-NP_013016.4_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:611394-613514:+ | gene-YKR090W_MUCL30388 | rna-NM_001179880.4_MUCL30388 | cds-NP_013016.4_MUCL30388 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:606305-608425:+ | gene-YKR090W_MUCL39482 | rna-NM_001179880.4_MUCL39482 | cds-NP_013016.4_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:612328-614448:+ | gene-YKR090W_MUCL42920 | rna-NM_001179880.4_MUCL42920 | cds-NP_013016.4_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:608935-611055:+ | gene-YKR090W_NCIM3186 | rna-NM_001179880.4_NCIM3186 | cds-NP_013016.4_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:606717-608837:+ | gene-YKR090W_NCYC1407 | rna-NM_001179880.4_NCYC1407 | cds-NP_013016.4_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:631922-634042:+ | gene-YKR090W_PE2H3 | rna-NM_001179880.4_PE2H3 | cds-NP_013016.4_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:616326-618446:+ | gene-YKR090W_PE2H4 | rna-NM_001179880.4_PE2H4 | cds-NP_013016.4_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:608946-611066:+ | gene-YKR090W_S288C | rna-NM_001179880.4_S288C | cds-NP_013016.4_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000029.1:70783-72903:- | gene-YKR090W_SA1 | rna-NM_001179880.4_SA1 | cds-NP_013016.4_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:607930-610050:+ | gene-YKR090W_ThermosaccDry | rna-NM_001179880.4_ThermosaccDry | cds-NP_013016.4_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:607193-609313:+ | gene-YKR090W_VR1 | rna-NM_001179880.4_VR1 | cds-NP_013016.4_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:604911-607031:+ | gene-YKR090W_ZTW1 | rna-NM_001179880.4_ZTW1 | cds-NP_013016.4_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:630213-632348:+ | gene-YKR090W_Sparadoxus | rna-NM_001179880.4_Sparadoxus | cds-NP_013016.4_Sparadoxus | 86.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |