Gene name: PWP2
Reference locus (S288C): YCR057C
Gene biotype: protein_coding
Description: Periodic tryptophan protein 2; Conserved 90S pre-ribosomal component; essential for proper endonucleolytic cleavage of the 35 S rRNA precursor at A0, A1, and A2 sites; contains eight WD-repeats; PWP2 deletion leads to defects in cell cycle and bud morphogenesis
Top 10 interactors (score): MPP10 (0.999); KRE33 (0.999); SOF1 (0.999); NOC4 (0.999); UTP14 (0.999); NOP14 (0.999); UTP9 (0.999); HCA4 (0.999); UTP10 (0.999); UTP7 (0.999); ECM16 (0.999); UTP22 (0.999); EMG1 (0.999); MAK21 (0.999); NOP9 (0.999); UTP21 (0.999); BUD21 (0.999); RRP7 (0.999); KRR1 (0.999); UTP20 (0.999)
Homologues (species, bitscore): PWP2 (Homo sapiens, 768.1); Pwp2 (Mus musculus, 775.0); pwp2h (Danio rerio, 736.9); pwp2 (Xenopus tropicalis, 251.5); CG12325 (Drosophila melanogaster, 684.9); F55F8.3 (Caenorhabditis elegans, 554.7); PWP2 (Arabidopsis thaliana, 691.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005297.1:214917-217688:- | gene-YCR057C_AKU4011 | rna-NM_001178769.1_AKU4011 | cds-NP_009984.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000067.1:69118-71889:- | gene-YCR057C_BG1 | rna-NM_001178769.1_BG1 | cds-NP_009984.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005505.1:210875-213646:- | gene-YCR057C_Bruggeman | rna-NM_001178769.1_Bruggeman | cds-NP_009984.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005521.1:222248-225019:- | gene-YCR057C_CAT1 | rna-NM_001178769.1_CAT1 | cds-NP_009984.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005361.1:209695-212466:- | gene-YCR057C_CBS1585 | rna-NM_001178769.1_CBS1585 | cds-NP_009984.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005345.1:221590-224361:- | gene-YCR057C_CBS436 | rna-NM_001178769.1_CBS436 | cds-NP_009984.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005329.1:201435-204206:- | gene-YCR057C_CBS6412 | rna-NM_001178769.1_CBS6412 | cds-NP_009984.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005313.1:215812-218583:- | gene-YCR057C_CBS6413 | rna-NM_001178769.1_CBS6413 | cds-NP_009984.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001524.1:219641-222412:- | gene-YCR057C_CENPK1137D | rna-NM_001178769.1_CENPK1137D | cds-NP_009984.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005473.1:210880-213651:- | gene-YCR057C_EthanolRed | rna-NM_001178769.1_EthanolRed | cds-NP_009984.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005537.1:216045-218816:- | gene-YCR057C_FaliES1 | rna-NM_001178769.1_FaliES1 | cds-NP_009984.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000014.1:4366-7137:+ | gene-YCR057C_JAY291 | rna-NM_001178769.1_JAY291 | cds-NP_009984.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005409.1:207859-210630:- | gene-YCR057C_MUCL30387 | rna-NM_001178769.1_MUCL30387 | cds-NP_009984.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005441.1:207233-210004:- | gene-YCR057C_MUCL30388 | rna-NM_001178769.1_MUCL30388 | cds-NP_009984.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005281.1:216268-219039:- | gene-YCR057C_MUCL39482 | rna-NM_001178769.1_MUCL39482 | cds-NP_009984.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005425.1:212709-215480:- | gene-YCR057C_MUCL42920 | rna-NM_001178769.1_MUCL42920 | cds-NP_009984.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011812.1:220089-222860:- | gene-YCR057C_NCIM3186 | rna-NM_001178769.1_NCIM3186 | cds-NP_009984.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005265.1:217127-219898:- | gene-YCR057C_NCYC1407 | rna-NM_001178769.1_NCYC1407 | cds-NP_009984.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994142.1:225803-228574:- | gene-YCR057C_PE2H3 | rna-NM_001178769.1_PE2H3 | cds-NP_009984.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999874.1:220329-223100:- | gene-YCR057C_PE2H4 | rna-NM_001178769.1_PE2H4 | cds-NP_009984.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001135.5:220457-223228:- | gene-YCR057C_S288C | rna-NM_001178769.1_S288C | cds-NP_009984.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000044.1:20343-23114:- | gene-YCR057C_SA1 | rna-NM_001178769.1_SA1 | cds-NP_009984.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005489.1:216028-218799:- | gene-YCR057C_ThermosaccDry | rna-NM_001178769.1_ThermosaccDry | cds-NP_009984.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005457.1:227301-230072:- | gene-YCR057C_VR1 | rna-NM_001178769.1_VR1 | cds-NP_009984.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000004.1:213850-216621:- | gene-YCR057C_ZTW1 | rna-NM_001178769.1_ZTW1 | cds-NP_009984.1_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047489.1:248007-250769:- | gene-YCR057C_Sparadoxus | rna-NM_001178769.1_Sparadoxus | cds-NP_009984.1_Sparadoxus | 91.8 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |