Gene name: PWP1
Reference locus (S288C): YLR196W
Gene biotype: protein_coding
Description: Periodic tryptophan protein 1; Protein with WD-40 repeats involved in rRNA processing; associates with trans-acting ribosome biogenesis factors; similar to beta-transducin superfamily; Belongs to the WD repeat PWP1 family
Top 10 interactors (score): ERB1 (0.999); RRB1 (0.999); EBP2 (0.999); BRX1 (0.999); RRP5 (0.999); PWP2 (0.999); YTM1 (0.999); NOP58 (0.999); NOP12 (0.999); UTP13 (0.998); RPF2 (0.998); NOC2 (0.998); DBP3 (0.998); NOP4 (0.998); CIC1 (0.998); SPB1 (0.997); NOP15 (0.997); RSA4 (0.997); NOG2 (0.997); MAK5 (0.997)
Homologues (species, bitscore): PWP1 (Homo sapiens, 247.3); Pwp1 (Mus musculus, 238.8); pwp1 (Danio rerio, 255.8); pwp1 (Xenopus tropicalis, 230.3); nclb (Drosophila melanogaster, 188.0); CELE_JC8.2 (Caenorhabditis elegans, 162.9); AT4G18905 (Arabidopsis thaliana, 219.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:498085-499815:+ | gene-YLR196W_AKU4011 | rna-NM_001182083.1_AKU4011 | cds-NP_013297.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:55268-56998:+ | gene-YLR196W_BG1 | rna-NM_001182083.1_BG1 | cds-NP_013297.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:538340-540070:+ | gene-YLR196W_Bruggeman | rna-NM_001182083.1_Bruggeman | cds-NP_013297.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:537932-539662:+ | gene-YLR196W_CAT1 | rna-NM_001182083.1_CAT1 | cds-NP_013297.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:533582-535312:+ | gene-YLR196W_CBS1585 | rna-NM_001182083.1_CBS1585 | cds-NP_013297.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:523724-525454:+ | gene-YLR196W_CBS436 | rna-NM_001182083.1_CBS436 | cds-NP_013297.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:502139-503869:+ | gene-YLR196W_CBS6412 | rna-NM_001182083.1_CBS6412 | cds-NP_013297.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:533874-535604:+ | gene-YLR196W_CBS6413 | rna-NM_001182083.1_CBS6413 | cds-NP_013297.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:528615-530345:+ | gene-YLR196W_CENPK1137D | rna-NM_001182083.1_CENPK1137D | cds-NP_013297.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:497612-499342:+ | gene-YLR196W_EthanolRed | rna-NM_001182083.1_EthanolRed | cds-NP_013297.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:526539-528269:+ | gene-YLR196W_FaliES1 | rna-NM_001182083.1_FaliES1 | cds-NP_013297.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:53442-55172:+ | gene-YLR196W_JAY291 | rna-NM_001182083.1_JAY291 | cds-NP_013297.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:538358-540088:+ | gene-YLR196W_MUCL30387 | rna-NM_001182083.1_MUCL30387 | cds-NP_013297.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:543293-545023:+ | gene-YLR196W_MUCL30388 | rna-NM_001182083.1_MUCL30388 | cds-NP_013297.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:534563-536293:+ | gene-YLR196W_MUCL39482 | rna-NM_001182083.1_MUCL39482 | cds-NP_013297.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:535062-536792:+ | gene-YLR196W_MUCL42920 | rna-NM_001182083.1_MUCL42920 | cds-NP_013297.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:543942-545672:+ | gene-YLR196W_NCIM3186 | rna-NM_001182083.1_NCIM3186 | cds-NP_013297.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:526992-528722:+ | gene-YLR196W_NCYC1407 | rna-NM_001182083.1_NCYC1407 | cds-NP_013297.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:531231-532961:+ | gene-YLR196W_PE2H3 | rna-NM_001182083.1_PE2H3 | cds-NP_013297.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:530975-532705:+ | gene-YLR196W_PE2H4 | rna-NM_001182083.1_PE2H4 | cds-NP_013297.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:543968-545698:+ | gene-YLR196W_S288C | rna-NM_001182083.1_S288C | cds-NP_013297.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:53499-55229:+ | gene-YLR196W_SA1 | rna-NM_001182083.1_SA1 | cds-NP_013297.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:529042-530772:+ | gene-YLR196W_ThermosaccDry | rna-NM_001182083.1_ThermosaccDry | cds-NP_013297.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:540343-542073:+ | gene-YLR196W_VR1 | rna-NM_001182083.1_VR1 | cds-NP_013297.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:53332-55062:+ | gene-YLR196W_ZTW1 | rna-NM_001182083.1_ZTW1 | cds-NP_013297.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:515108-516838:+ | gene-YLR196W_Sparadoxus | rna-NM_001182083.1_Sparadoxus | cds-NP_013297.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |