Gene name: PUS9
Reference locus (S288C): YDL036C
Gene biotype: protein_coding
Description: Mitochondrial tRNA:pseudouridine synthase; catalyzes the formation of pseudouridine at position 32 in mitochondrial tRNAs; contains an N-terminal mitochondrial targeting sequence; PUS9 has a paralog, RIB2, that arose from the whole genome duplication
Top 10 interactors (score): PUS7 (0.982); PUS4 (0.968); PUS2 (0.964); PUS1 (0.952); PUS5 (0.929); DEG1 (0.889); CBF5 (0.839); KEL3 (0.823); NHP2 (0.743); NOP10 (0.733); ECM25 (0.695); GAR1 (0.659); CDD1 (0.653); SVP26 (0.639); TRM7 (0.635); DED81 (0.625); CMR1 (0.619); REX3 (0.603); MET7 (0.579); THP3 (0.579)
Homologues (species, bitscore): RPUSD2 (Homo sapiens, 271.2); Rpusd2 (Mus musculus, 281.6); LOC565088 (Danio rerio, 273.9); rpusd2 (Xenopus tropicalis, 286.6); RluA-1 (Drosophila melanogaster, 254.6); K07E8.7 (Caenorhabditis elegans, 206.8); AT5G51140 (Arabidopsis thaliana, 216.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:373573-374961:- | gene-YDL036C_AKU4011 | rna-NM_001180095.1_AKU4011 | cds-NP_010248.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:174899-176287:+ | gene-YDL036C_BG1 | rna-NM_001180095.1_BG1 | cds-NP_010248.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:391979-393367:- | gene-YDL036C_Bruggeman | rna-NM_001180095.1_Bruggeman | cds-NP_010248.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:386786-388174:- | gene-YDL036C_CAT1 | rna-NM_001180095.1_CAT1 | cds-NP_010248.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:369985-371373:- | gene-YDL036C_CBS1585 | rna-NM_001180095.1_CBS1585 | cds-NP_010248.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:387530-388918:- | gene-YDL036C_CBS436 | rna-NM_001180095.1_CBS436 | cds-NP_010248.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:367778-369166:- | gene-YDL036C_CBS6412 | rna-NM_001180095.1_CBS6412 | cds-NP_010248.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:389745-391133:- | gene-YDL036C_CBS6413 | rna-NM_001180095.1_CBS6413 | cds-NP_010248.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:386373-387760:- | gene-YDL036C_CENPK1137D | rna-NM_001180095.1_CENPK1137D | cds-NP_010248.1_CENPK1137D | 99.9 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:382385-383773:- | gene-YDL036C_EthanolRed | rna-NM_001180095.1_EthanolRed | cds-NP_010248.1_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:388582-389970:- | gene-YDL036C_FaliES1 | rna-NM_001180095.1_FaliES1 | cds-NP_010248.1_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:3160-4549:- | gene-YDL036C_JAY291 | rna-NM_001180095.1_JAY291 | cds-NP_010248.1_JAY291 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:387965-389353:- | gene-YDL036C_MUCL30387 | rna-NM_001180095.1_MUCL30387 | cds-NP_010248.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:378490-379878:- | gene-YDL036C_MUCL30388 | rna-NM_001180095.1_MUCL30388 | cds-NP_010248.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:371166-372554:- | gene-YDL036C_MUCL39482 | rna-NM_001180095.1_MUCL39482 | cds-NP_010248.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:293519-294907:- | gene-YDL036C_MUCL42920 | rna-NM_001180095.1_MUCL42920 | cds-NP_010248.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:387436-388824:- | gene-YDL036C_NCIM3186 | rna-NM_001180095.1_NCIM3186 | cds-NP_010248.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:371081-372469:- | gene-YDL036C_NCYC1407 | rna-NM_001180095.1_NCYC1407 | cds-NP_010248.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:378644-380032:- | gene-YDL036C_PE2H3 | rna-NM_001180095.1_PE2H3 | cds-NP_010248.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:378002-379390:- | gene-YDL036C_PE2H4 | rna-NM_001180095.1_PE2H4 | cds-NP_010248.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:387513-388901:- | gene-YDL036C_S288C | rna-NM_001180095.1_S288C | cds-NP_010248.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:46029-47417:+ | gene-YDL036C_SA1 | rna-NM_001180095.1_SA1 | cds-NP_010248.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:388040-389428:- | gene-YDL036C_ThermosaccDry | rna-NM_001180095.1_ThermosaccDry | cds-NP_010248.1_ThermosaccDry | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:391138-392526:- | gene-YDL036C_VR1 | rna-NM_001180095.1_VR1 | cds-NP_010248.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:385953-387340:- | gene-YDL036C_ZTW1 | rna-NM_001180095.1_ZTW1 | cds-NP_010248.1_ZTW1 | 99.4 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:390244-391632:- | gene-YDL036C_Sparadoxus | rna-NM_001180095.1_Sparadoxus | cds-NP_010248.1_Sparadoxus | 87.6 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |