Gene name: PUS7
Reference locus (S288C): YOR243C
Gene biotype: protein_coding
Description: Pseudouridine synthase; catalyzes pseudouridylation at positions 35 and 56 in U2 snRNA, position 50 in 5S rRNA, position 13 in cytoplasmic tRNAs, and position 35 in pre-tRNA(Tyr); also pseudouridylates some mRNAs; relocates from nucleus to cytoplasm during heat shock and differentially modifies some mRNAs during heat shock; conserved in archaea, vertebrates, and some bacteria; Belongs to the pseudouridine synthase TruD family
Top 10 interactors (score): PUS4 (0.993); PUS1 (0.986); PUS9 (0.982); NCL1 (0.979); CBF5 (0.979); DEG1 (0.976); TRM7 (0.974); PUS6 (0.974); BRX1 (0.967); PUS5 (0.967); PUS2 (0.965); RIB2 (0.963); NOP4 (0.959); NHP2 (0.953); YTM1 (0.949); NOP2 (0.948); UTP21 (0.946); NOC3 (0.944); NOC2 (0.943); UTP5 (0.941)
Homologues (species, bitscore): PUS7 (Homo sapiens, 361.3); Pus7 (Mus musculus, 359.8); pus7 (Danio rerio, 364.0); pus7 (Xenopus tropicalis, 377.5); CG6745 (Drosophila melanogaster, 303.5); B0024.11 (Caenorhabditis elegans, 166.0); AT3G04820 (Arabidopsis thaliana, 347.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:780983-783013:- | gene-YOR243C_AKU4011 | rna-NM_001183662.1_AKU4011 | cds-NP_014886.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:183023-185053:- | gene-YOR243C_BG1 | rna-NM_001183662.1_BG1 | cds-NP_014886.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:766450-768480:- | gene-YOR243C_Bruggeman | rna-NM_001183662.1_Bruggeman | cds-NP_014886.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:767101-769131:- | gene-YOR243C_CAT1 | rna-NM_001183662.1_CAT1 | cds-NP_014886.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:763972-766002:- | gene-YOR243C_CBS1585 | rna-NM_001183662.1_CBS1585 | cds-NP_014886.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:762667-764697:- | gene-YOR243C_CBS436 | rna-NM_001183662.1_CBS436 | cds-NP_014886.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:761091-763121:- | gene-YOR243C_CBS6412 | rna-NM_001183662.1_CBS6412 | cds-NP_014886.1_CBS6412 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:769731-771761:- | gene-YOR243C_CBS6413 | rna-NM_001183662.1_CBS6413 | cds-NP_014886.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:789974-792004:- | gene-YOR243C_CENPK1137D | rna-NM_001183662.1_CENPK1137D | cds-NP_014886.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:757103-759133:- | gene-YOR243C_EthanolRed | rna-NM_001183662.1_EthanolRed | cds-NP_014886.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:762502-764532:- | gene-YOR243C_FaliES1 | rna-NM_001183662.1_FaliES1 | cds-NP_014886.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000381.1:62305-64335:+ | gene-YOR243C_JAY291 | rna-NM_001183662.1_JAY291 | cds-NP_014886.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:770721-772751:- | gene-YOR243C_MUCL30387 | rna-NM_001183662.1_MUCL30387 | cds-NP_014886.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:777839-779869:- | gene-YOR243C_MUCL30388 | rna-NM_001183662.1_MUCL30388 | cds-NP_014886.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:771302-773332:- | gene-YOR243C_MUCL39482 | rna-NM_001183662.1_MUCL39482 | cds-NP_014886.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:780891-782921:- | gene-YOR243C_MUCL42920 | rna-NM_001183662.1_MUCL42920 | cds-NP_014886.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:790100-792130:- | gene-YOR243C_NCIM3186 | rna-NM_001183662.1_NCIM3186 | cds-NP_014886.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:771401-773431:- | gene-YOR243C_NCYC1407 | rna-NM_001183662.1_NCYC1407 | cds-NP_014886.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:770703-772733:- | gene-YOR243C_PE2H3 | rna-NM_001183662.1_PE2H3 | cds-NP_014886.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:781080-783110:- | gene-YOR243C_PE2H4 | rna-NM_001183662.1_PE2H4 | cds-NP_014886.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:790211-792241:- | gene-YOR243C_S288C | rna-NM_001183662.1_S288C | cds-NP_014886.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:200204-202234:- | gene-YOR243C_SA1 | rna-NM_001183662.1_SA1 | cds-NP_014886.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:761685-763715:- | gene-YOR243C_ThermosaccDry | rna-NM_001183662.1_ThermosaccDry | cds-NP_014886.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:825143-827173:- | gene-YOR243C_VR1 | rna-NM_001183662.1_VR1 | cds-NP_014886.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:494601-496631:- | gene-YOR243C_ZTW1 | rna-NM_001183662.1_ZTW1 | cds-NP_014886.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:767590-769620:- | gene-YOR243C_Sparadoxus | rna-NM_001183662.1_Sparadoxus | cds-NP_014886.1_Sparadoxus | 90.7 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |