Gene name: PUS5
Reference locus (S288C): YLR165C
Gene biotype: protein_coding
Description: 21S rRNA pseudouridine(2819) synthase; Pseudouridine synthase; catalyzes only the formation of pseudouridine (Psi)-2819 in mitochondrial 21S rRNA; not essential for viability
Top 10 interactors (score): PUS2 (0.969); PUS7 (0.967); PUS6 (0.944); PUS1 (0.93); PUS9 (0.929); PUS4 (0.923); DEG1 (0.879); RIB2 (0.86); TAN1 (0.723); CBF5 (0.598); NOP10 (0.59); TBS1 (0.569); MSS1 (0.548); NHP2 (0.543); SBP1 (0.521); YLL054C (0.499); DED81 (0.499); GAR1 (0.471); TRM3 (0.47); MRM1 (0.434)
Homologues (species, bitscore): K07E8.7 (Caenorhabditis elegans, 50.1); AT3G19440 (Arabidopsis thaliana, 51.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:448597-449361:- | gene-YLR165C_AKU4011 | rna-NM_001182052.1_AKU4011 | cds-NP_013266.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000177.1:5829-6593:- | gene-YLR165C_BG1 | rna-NM_001182052.1_BG1 | cds-NP_013266.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:488942-489706:- | gene-YLR165C_Bruggeman | rna-NM_001182052.1_Bruggeman | cds-NP_013266.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:488472-489236:- | gene-YLR165C_CAT1 | rna-NM_001182052.1_CAT1 | cds-NP_013266.1_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:484094-484858:- | gene-YLR165C_CBS1585 | rna-NM_001182052.1_CBS1585 | cds-NP_013266.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:474238-475002:- | gene-YLR165C_CBS436 | rna-NM_001182052.1_CBS436 | cds-NP_013266.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:452665-453429:- | gene-YLR165C_CBS6412 | rna-NM_001182052.1_CBS6412 | cds-NP_013266.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:484400-485164:- | gene-YLR165C_CBS6413 | rna-NM_001182052.1_CBS6413 | cds-NP_013266.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:479215-479979:- | gene-YLR165C_CENPK1137D | rna-NM_001182052.1_CENPK1137D | cds-NP_013266.1_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:448118-448882:- | gene-YLR165C_EthanolRed | rna-NM_001182052.1_EthanolRed | cds-NP_013266.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:477045-477809:- | gene-YLR165C_FaliES1 | rna-NM_001182052.1_FaliES1 | cds-NP_013266.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000004.1:3982-4746:- | gene-YLR165C_JAY291 | rna-NM_001182052.1_JAY291 | cds-NP_013266.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:488963-489727:- | gene-YLR165C_MUCL30387 | rna-NM_001182052.1_MUCL30387 | cds-NP_013266.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:493895-494659:- | gene-YLR165C_MUCL30388 | rna-NM_001182052.1_MUCL30388 | cds-NP_013266.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:485091-485855:- | gene-YLR165C_MUCL39482 | rna-NM_001182052.1_MUCL39482 | cds-NP_013266.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:485667-486431:- | gene-YLR165C_MUCL42920 | rna-NM_001182052.1_MUCL42920 | cds-NP_013266.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:494468-495232:- | gene-YLR165C_NCIM3186 | rna-NM_001182052.1_NCIM3186 | cds-NP_013266.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:477515-478279:- | gene-YLR165C_NCYC1407 | rna-NM_001182052.1_NCYC1407 | cds-NP_013266.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:481769-482533:- | gene-YLR165C_PE2H3 | rna-NM_001182052.1_PE2H3 | cds-NP_013266.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:481513-482277:- | gene-YLR165C_PE2H4 | rna-NM_001182052.1_PE2H4 | cds-NP_013266.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:494494-495258:- | gene-YLR165C_S288C | rna-NM_001182052.1_S288C | cds-NP_013266.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000042.1:4040-4804:- | gene-YLR165C_SA1 | rna-NM_001182052.1_SA1 | cds-NP_013266.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:479569-480333:- | gene-YLR165C_ThermosaccDry | rna-NM_001182052.1_ThermosaccDry | cds-NP_013266.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:490882-491646:- | gene-YLR165C_VR1 | rna-NM_001182052.1_VR1 | cds-NP_013266.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000024.1:3937-4701:- | gene-YLR165C_ZTW1 | rna-NM_001182052.1_ZTW1 | cds-NP_013266.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:465422-466186:- | gene-YLR165C_Sparadoxus | rna-NM_001182052.1_Sparadoxus | cds-NP_013266.1_Sparadoxus | 85.2 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | False | True |