Gene name: PUP3
Reference locus (S288C): YER094C
Gene biotype: protein_coding
Description: Beta 3 subunit of the 20S proteasome; involved in ubiquitin-dependent catabolism; human homolog is subunit C10
Top 10 interactors (score): PRE5 (0.999); SCL1 (0.999); RPN1 (0.999); RPT2 (0.999); RPT1 (0.999); PUP1 (0.999); RPN8 (0.999); RPT5 (0.999); RPN2 (0.999); UBP6 (0.999); RPT6 (0.999); PRE10 (0.999); PRE8 (0.999); RPN3 (0.999); PRE1 (0.999); PRE7 (0.999); RPT3 (0.999); PRE4 (0.999); RPT4 (0.999); RPN6 (0.999)
Homologues (species, bitscore): PSMB3 (Homo sapiens, 239.2); Psmb3 (Mus musculus, 241.5); psmb3 (Danio rerio, 248.1); psmb3 (Xenopus tropicalis, 239.2); Prosbeta3 (Drosophila melanogaster, 244.2); pbs-3 (Caenorhabditis elegans, 182.6); PBC1 (Arabidopsis thaliana, 219.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:342501-343118:- | gene-YER094C_AKU4011 | rna-NM_001178985.3_AKU4011 | cds-NP_011020.3_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:82717-83334:+ | gene-YER094C_BG1 | rna-NM_001178985.3_BG1 | cds-NP_011020.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:352062-352679:- | gene-YER094C_Bruggeman | rna-NM_001178985.3_Bruggeman | cds-NP_011020.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:346415-347032:- | gene-YER094C_CAT1 | rna-NM_001178985.3_CAT1 | cds-NP_011020.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:342366-342983:- | gene-YER094C_CBS1585 | rna-NM_001178985.3_CBS1585 | cds-NP_011020.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:344471-345088:- | gene-YER094C_CBS436 | rna-NM_001178985.3_CBS436 | cds-NP_011020.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:341822-342439:- | gene-YER094C_CBS6412 | rna-NM_001178985.3_CBS6412 | cds-NP_011020.3_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:347812-348429:- | gene-YER094C_CBS6413 | rna-NM_001178985.3_CBS6413 | cds-NP_011020.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:346639-347256:- | gene-YER094C_CENPK1137D | rna-NM_001178985.3_CENPK1137D | cds-NP_011020.3_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:342844-343461:- | gene-YER094C_EthanolRed | rna-NM_001178985.3_EthanolRed | cds-NP_011020.3_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:343289-343906:- | gene-YER094C_FaliES1 | rna-NM_001178985.3_FaliES1 | cds-NP_011020.3_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:58349-58966:- | gene-YER094C_JAY291 | rna-NM_001178985.3_JAY291 | cds-NP_011020.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:347460-348077:- | gene-YER094C_MUCL30387 | rna-NM_001178985.3_MUCL30387 | cds-NP_011020.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:343134-343751:- | gene-YER094C_MUCL30388 | rna-NM_001178985.3_MUCL30388 | cds-NP_011020.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:341390-342007:- | gene-YER094C_MUCL39482 | rna-NM_001178985.3_MUCL39482 | cds-NP_011020.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:348599-349216:- | gene-YER094C_MUCL42920 | rna-NM_001178985.3_MUCL42920 | cds-NP_011020.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:348728-349345:- | gene-YER094C_NCIM3186 | rna-NM_001178985.3_NCIM3186 | cds-NP_011020.3_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:346453-347070:- | gene-YER094C_NCYC1407 | rna-NM_001178985.3_NCYC1407 | cds-NP_011020.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:357104-357721:- | gene-YER094C_PE2H3 | rna-NM_001178985.3_PE2H3 | cds-NP_011020.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:347045-347662:- | gene-YER094C_PE2H4 | rna-NM_001178985.3_PE2H4 | cds-NP_011020.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:348729-349346:- | gene-YER094C_S288C | rna-NM_001178985.3_S288C | cds-NP_011020.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:58348-58965:- | gene-YER094C_SA1 | rna-NM_001178985.3_SA1 | cds-NP_011020.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:344086-344703:- | gene-YER094C_ThermosaccDry | rna-NM_001178985.3_ThermosaccDry | cds-NP_011020.3_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:344746-345363:- | gene-YER094C_VR1 | rna-NM_001178985.3_VR1 | cds-NP_011020.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:341244-341861:- | gene-YER094C_ZTW1 | rna-NM_001178985.3_ZTW1 | cds-NP_011020.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:344659-345276:- | gene-YER094C_Sparadoxus | rna-NM_001178985.3_Sparadoxus | cds-NP_011020.3_Sparadoxus | 94.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |