Gene name: PUP1
Reference locus (S288C): YOR157C
Gene biotype: protein_coding
Description: Beta 2 subunit of the 20S proteasome; endopeptidase with trypsin-like activity that cleaves after basic residues; synthesized as a proprotein before being proteolytically processed for assembly into 20S particle; human homolog is subunit Z
Top 10 interactors (score): PRE8 (0.999); RPN13 (0.999); PRE7 (0.999); PRE1 (0.999); PUP3 (0.999); RPT4 (0.999); PRE4 (0.999); RPT3 (0.999); RPN3 (0.999); RPT6 (0.999); PRE10 (0.999); RPT1 (0.999); PRE9 (0.999); SCL1 (0.999); RPT2 (0.999); PRE5 (0.999); RPN1 (0.999); RPN6 (0.999); RPN2 (0.999); UMP1 (0.999)
Homologues (species, bitscore): PSMB7 (Homo sapiens, 289.3); Psmb7 (Mus musculus, 290.0); psmb7 (Danio rerio, 280.4); psmb7 (Xenopus tropicalis, 284.3); Prosbeta2 (Drosophila melanogaster, 288.9); pbs-2 (Caenorhabditis elegans, 207.2); PBB2 (Arabidopsis thaliana, 276.2)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:628602-629387:- | gene-YOR157C_AKU4011 | rna-NM_001183576.3_AKU4011 | cds-NP_014800.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000123.1:30359-31144:- | gene-YOR157C_BG1 | rna-NM_001183576.3_BG1 | cds-NP_014800.3_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:612676-613461:- | gene-YOR157C_Bruggeman | rna-NM_001183576.3_Bruggeman | cds-NP_014800.3_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:612694-613479:- | gene-YOR157C_CAT1 | rna-NM_001183576.3_CAT1 | cds-NP_014800.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:611097-611882:- | gene-YOR157C_CBS1585 | rna-NM_001183576.3_CBS1585 | cds-NP_014800.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:609392-610177:- | gene-YOR157C_CBS436 | rna-NM_001183576.3_CBS436 | cds-NP_014800.3_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:608709-609494:- | gene-YOR157C_CBS6412 | rna-NM_001183576.3_CBS6412 | cds-NP_014800.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:617390-618175:- | gene-YOR157C_CBS6413 | rna-NM_001183576.3_CBS6413 | cds-NP_014800.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:630725-631510:- | gene-YOR157C_CENPK1137D | rna-NM_001183576.3_CENPK1137D | cds-NP_014800.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:604805-605590:- | gene-YOR157C_EthanolRed | rna-NM_001183576.3_EthanolRed | cds-NP_014800.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:609658-610443:- | gene-YOR157C_FaliES1 | rna-NM_001183576.3_FaliES1 | cds-NP_014800.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000070.1:33095-33880:+ | gene-YOR157C_JAY291 | rna-NM_001183576.3_JAY291 | cds-NP_014800.3_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:617483-618268:- | gene-YOR157C_MUCL30387 | rna-NM_001183576.3_MUCL30387 | cds-NP_014800.3_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:624246-625031:- | gene-YOR157C_MUCL30388 | rna-NM_001183576.3_MUCL30388 | cds-NP_014800.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:618938-619723:- | gene-YOR157C_MUCL39482 | rna-NM_001183576.3_MUCL39482 | cds-NP_014800.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:628360-629145:- | gene-YOR157C_MUCL42920 | rna-NM_001183576.3_MUCL42920 | cds-NP_014800.3_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:630855-631640:- | gene-YOR157C_NCIM3186 | rna-NM_001183576.3_NCIM3186 | cds-NP_014800.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:619024-619809:- | gene-YOR157C_NCYC1407 | rna-NM_001183576.3_NCYC1407 | cds-NP_014800.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:617536-618321:- | gene-YOR157C_PE2H3 | rna-NM_001183576.3_PE2H3 | cds-NP_014800.3_PE2H3 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:627913-628698:- | gene-YOR157C_PE2H4 | rna-NM_001183576.3_PE2H4 | cds-NP_014800.3_PE2H4 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:630966-631751:- | gene-YOR157C_S288C | rna-NM_001183576.3_S288C | cds-NP_014800.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000006.1:47522-48307:- | gene-YOR157C_SA1 | rna-NM_001183576.3_SA1 | cds-NP_014800.3_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:608841-609626:- | gene-YOR157C_ThermosaccDry | rna-NM_001183576.3_ThermosaccDry | cds-NP_014800.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:672539-673324:- | gene-YOR157C_VR1 | rna-NM_001183576.3_VR1 | cds-NP_014800.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:342291-343076:- | gene-YOR157C_ZTW1 | rna-NM_001183576.3_ZTW1 | cds-NP_014800.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:613978-614763:- | gene-YOR157C_Sparadoxus | rna-NM_001183576.3_Sparadoxus | cds-NP_014800.3_Sparadoxus | 93.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |