Gene name: PUF4
Reference locus (S288C): YGL014W
Gene biotype: protein_coding
Description: Pumilio homology domain family member 4; Member of the PUF protein family; PUF family is defined by the presence of Pumilio homology domains that confer RNA binding activity; preferentially binds mRNAs encoding nucleolar ribosomal RNA-processing factors
Top 10 interactors (score): PUF6 (0.92); POP2 (0.875); WHI3 (0.872); CAF20 (0.867); PUB1 (0.866); HEK2 (0.793); PAB1 (0.786); COX17 (0.778); VTS1 (0.774); DHH1 (0.773); FAB1 (0.77); CCR4 (0.769); VPS27 (0.764); HO (0.757); NOP9 (0.753); YLL032C (0.749); CDC39 (0.744); PUF2 (0.685); PUF3 (0.676); MPT5 (0.66)
Homologues (species, bitscore): PUM2 (Homo sapiens, 206.1); Pum2 (Mus musculus, 203.4); pum1 (Danio rerio, 190.3); pum2 (Xenopus tropicalis, 205.3); pum (Drosophila melanogaster, 193.7); puf-9 (Caenorhabditis elegans, 175.3); PUM8 (Arabidopsis thaliana, 233.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:468204-470873:+ | gene-YGL014W_AKU4011 | rna-NM_001180879.1_AKU4011 | cds-NP_011501.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:105253-107934:- | gene-YGL014W_BG1 | rna-NM_001180879.1_BG1 | cds-NP_011501.1_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:469154-471823:+ | gene-YGL014W_Bruggeman | rna-NM_001180879.1_Bruggeman | cds-NP_011501.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:467455-470121:+ | gene-YGL014W_CAT1 | rna-NM_001180879.1_CAT1 | cds-NP_011501.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:469675-472344:+ | gene-YGL014W_CBS1585 | rna-NM_001180879.1_CBS1585 | cds-NP_011501.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:464015-466684:+ | gene-YGL014W_CBS436 | rna-NM_001180879.1_CBS436 | cds-NP_011501.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:462290-464959:+ | gene-YGL014W_CBS6412 | rna-NM_001180879.1_CBS6412 | cds-NP_011501.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:466346-469015:+ | gene-YGL014W_CBS6413 | rna-NM_001180879.1_CBS6413 | cds-NP_011501.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:465977-468643:+ | gene-YGL014W_CENPK1137D | rna-NM_001180879.1_CENPK1137D | cds-NP_011501.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:456571-459240:+ | gene-YGL014W_EthanolRed | rna-NM_001180879.1_EthanolRed | cds-NP_011501.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:459809-462478:+ | gene-YGL014W_FaliES1 | rna-NM_001180879.1_FaliES1 | cds-NP_011501.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000177.1:28528-30122:+ | gene-YGL014W_JAY291 | rna-NM_001180879.1_JAY291 | cds-NP_011501.1_JAY291 | 59.2 | 59.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:466383-469046:+ | gene-YGL014W_MUCL30387 | rna-NM_001180879.1_MUCL30387 | cds-NP_011501.1_MUCL30387 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:468932-471595:+ | gene-YGL014W_MUCL30388 | rna-NM_001180879.1_MUCL30388 | cds-NP_011501.1_MUCL30388 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:465514-468183:+ | gene-YGL014W_MUCL39482 | rna-NM_001180879.1_MUCL39482 | cds-NP_011501.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:474938-477601:+ | gene-YGL014W_MUCL42920 | rna-NM_001180879.1_MUCL42920 | cds-NP_011501.1_MUCL42920 | 99.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:466141-468807:+ | gene-YGL014W_NCIM3186 | rna-NM_001180879.1_NCIM3186 | cds-NP_011501.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:459536-462205:+ | gene-YGL014W_NCYC1407 | rna-NM_001180879.1_NCYC1407 | cds-NP_011501.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:462193-464871:+ | gene-YGL014W_PE2H3 | rna-NM_001180879.1_PE2H3 | cds-NP_011501.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:467243-469921:+ | gene-YGL014W_PE2H4 | rna-NM_001180879.1_PE2H4 | cds-NP_011501.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:466141-468807:+ | gene-YGL014W_S288C | rna-NM_001180879.1_S288C | cds-NP_011501.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:86778-89459:- | gene-YGL014W_SA1 | rna-NM_001180879.1_SA1 | cds-NP_011501.1_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:479134-481803:+ | gene-YGL014W_ThermosaccDry | rna-NM_001180879.1_ThermosaccDry | cds-NP_011501.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:569209-571890:+ | gene-YGL014W_VR1 | rna-NM_001180879.1_VR1 | cds-NP_011501.1_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:457759-460428:+ | gene-YGL014W_ZTW1 | rna-NM_001180879.1_ZTW1 | cds-NP_011501.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:467357-470026:+ | gene-YGL014W_Sparadoxus | rna-NM_001180879.1_Sparadoxus | cds-NP_011501.1_Sparadoxus | 89.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |