Gene name: PUF3
Reference locus (S288C): YLL013C
Gene biotype: protein_coding
Description: mRNA-binding protein PUF3; Protein of the mitochondrial outer surface; links the Arp2/3 complex with the mitochore during anterograde mitochondrial movement; also binds to and promotes degradation of mRNAs for select nuclear-encoded mitochondrial proteins
Top 10 interactors (score): COX17 (0.997); POP2 (0.997); CCR4 (0.982); UFD4 (0.964); DHH1 (0.961); CDC33 (0.951); RDL2 (0.938); PAB1 (0.937); CDC39 (0.935); MNP1 (0.926); MRP1 (0.92); VTS1 (0.917); XRN1 (0.914); EHD3 (0.914); TOM20 (0.91); SCP160 (0.902); BFR1 (0.9); SCD6 (0.9); COQ5 (0.898); MRPL8 (0.896)
Homologues (species, bitscore): PUM2 (Homo sapiens, 320.1); Pum1 (Mus musculus, 318.9); pum1 (Danio rerio, 310.8); pum2 (Xenopus tropicalis, 320.1); pum (Drosophila melanogaster, 317.4); puf-9 (Caenorhabditis elegans, 307.8); PUM3 (Arabidopsis thaliana, 306.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:109815-112454:- | gene-YLL013C_AKU4011 | rna-NM_001181833.1_AKU4011 | cds-NP_013088.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:73292-75937:- | gene-YLL013C_BG1 | rna-NM_001181833.1_BG1 | cds-NP_013088.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:119900-122578:- | gene-YLL013C_Bruggeman | rna-NM_001181833.1_Bruggeman | cds-NP_013088.1_Bruggeman | 98.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:120490-123135:- | gene-YLL013C_CAT1 | rna-NM_001181833.1_CAT1 | cds-NP_013088.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:117412-120051:- | gene-YLL013C_CBS1585 | rna-NM_001181833.1_CBS1585 | cds-NP_013088.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:107768-110446:- | gene-YLL013C_CBS436 | rna-NM_001181833.1_CBS436 | cds-NP_013088.1_CBS436 | 97.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:116177-118816:- | gene-YLL013C_CBS6412 | rna-NM_001181833.1_CBS6412 | cds-NP_013088.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:117673-120312:- | gene-YLL013C_CBS6413 | rna-NM_001181833.1_CBS6413 | cds-NP_013088.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:107140-109779:- | gene-YLL013C_CENPK1137D | rna-NM_001181833.1_CENPK1137D | cds-NP_013088.1_CENPK1137D | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:109854-112493:- | gene-YLL013C_EthanolRed | rna-NM_001181833.1_EthanolRed | cds-NP_013088.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:109426-112065:- | gene-YLL013C_FaliES1 | rna-NM_001181833.1_FaliES1 | cds-NP_013088.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000083.1:43282-45933:+ | gene-YLL013C_JAY291 | rna-NM_001181833.1_JAY291 | cds-NP_013088.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:117535-120174:- | gene-YLL013C_MUCL30387 | rna-NM_001181833.1_MUCL30387 | cds-NP_013088.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:121765-124404:- | gene-YLL013C_MUCL30388 | rna-NM_001181833.1_MUCL30388 | cds-NP_013088.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:117882-120521:- | gene-YLL013C_MUCL39482 | rna-NM_001181833.1_MUCL39482 | cds-NP_013088.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:117551-120229:- | gene-YLL013C_MUCL42920 | rna-NM_001181833.1_MUCL42920 | cds-NP_013088.1_MUCL42920 | 98.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:122049-124688:- | gene-YLL013C_NCIM3186 | rna-NM_001181833.1_NCIM3186 | cds-NP_013088.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:109490-112129:- | gene-YLL013C_NCYC1407 | rna-NM_001181833.1_NCYC1407 | cds-NP_013088.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:115852-118503:- | gene-YLL013C_PE2H3 | rna-NM_001181833.1_PE2H3 | cds-NP_013088.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:115587-118226:- | gene-YLL013C_PE2H4 | rna-NM_001181833.1_PE2H4 | cds-NP_013088.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:122075-124714:- | gene-YLL013C_S288C | rna-NM_001181833.1_S288C | cds-NP_013088.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000062.1:25036-27678:- | gene-YLL013C_SA1 | rna-NM_001181833.1_SA1 | cds-NP_013088.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:109931-112570:- | gene-YLL013C_ThermosaccDry | rna-NM_001181833.1_ThermosaccDry | cds-NP_013088.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:123566-126217:- | gene-YLL013C_VR1 | rna-NM_001181833.1_VR1 | cds-NP_013088.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:109251-111890:- | gene-YLL013C_ZTW1 | rna-NM_001181833.1_ZTW1 | cds-NP_013088.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:117752-120388:- | gene-YLL013C_Sparadoxus | rna-NM_001181833.1_Sparadoxus | cds-NP_013088.1_Sparadoxus | 86.9 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |