Gene name: PUF2
Reference locus (S288C): YPR042C
Gene biotype: protein_coding
Description: PUF family mRNA-binding protein; Pumilio homology domain confers RNA binding activity; preferentially binds mRNAs encoding membrane-associated proteins; binding site composed of two UAAU tetranucleotides, separated by a 3-nt linker; PUF2 has a paralog, JSN1, that arose from the whole genome duplication
Top 10 interactors (score): WHI3 (0.914); MRN1 (0.91); PUF6 (0.874); PUB1 (0.847); YLL032C (0.842); HEK2 (0.828); YBL081W (0.82); SHE2 (0.81); NSP1 (0.792); NAM8 (0.783); YBR016W (0.783); SCP160 (0.781); SDD4 (0.769); MUD1 (0.764); NOT3 (0.751); NRP1 (0.729); POP2 (0.723); COX17 (0.715); CDC33 (0.712); SUP35 (0.698)
Homologues (species, bitscore): PUM1 (Homo sapiens, 61.6); Pum1 (Mus musculus, 63.5); pum1 (Danio rerio, 59.7); pum2 (Xenopus tropicalis, 58.9); pum (Drosophila melanogaster, 53.9); puf-9 (Caenorhabditis elegans, 64.7); PUM9 (Arabidopsis thaliana, 72.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:622118-625321:- | gene-YPR042C_AKU4011 | rna-NM_001184139.1_AKU4011 | cds-NP_015367.1_AKU4011 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:272339-275567:+ | gene-YPR042C_BG1 | rna-NM_001184139.1_BG1 | cds-NP_015367.1_BG1 | 99.3 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:699757-702987:- | gene-YPR042C_Bruggeman | rna-NM_001184139.1_Bruggeman | cds-NP_015367.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:743191-746443:- | gene-YPR042C_CAT1 | rna-NM_001184139.1_CAT1 | cds-NP_015367.1_CAT1 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:625802-629005:- | gene-YPR042C_CBS1585 | rna-NM_001184139.1_CBS1585 | cds-NP_015367.1_CBS1585 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:640168-643392:- | gene-YPR042C_CBS436 | rna-NM_001184139.1_CBS436 | cds-NP_015367.1_CBS436 | 99.7 | 99.9 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:629550-632753:- | gene-YPR042C_CBS6412 | rna-NM_001184139.1_CBS6412 | cds-NP_015367.1_CBS6412 | 98.8 | 99.2 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:622751-625954:- | gene-YPR042C_CBS6413 | rna-NM_001184139.1_CBS6413 | cds-NP_015367.1_CBS6413 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:650407-653634:- | gene-YPR042C_CENPK1137D | rna-NM_001184139.1_CENPK1137D | cds-NP_015367.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:949296-952508:- | gene-YPR042C_EthanolRed | rna-NM_001184139.1_EthanolRed | cds-NP_015367.1_EthanolRed | 98.5 | 99.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:627842-631147:- | gene-YPR042C_FaliES1 | rna-NM_001184139.1_FaliES1 | cds-NP_015367.1_FaliES1 | 97.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000446.1:1-3114:- | gene-YPR042C_JAY291 | rna-NM_001184139.1_JAY291 | cds-NP_015367.1_JAY291 | 96.4 | 96.4 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:640969-644249:- | gene-YPR042C_MUCL30387 | rna-NM_001184139.1_MUCL30387 | cds-NP_015367.1_MUCL30387 | 98.3 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:639664-642953:- | gene-YPR042C_MUCL30388 | rna-NM_001184139.1_MUCL30388 | cds-NP_015367.1_MUCL30388 | 98.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:619059-622262:- | gene-YPR042C_MUCL39482 | rna-NM_001184139.1_MUCL39482 | cds-NP_015367.1_MUCL39482 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:681860-685090:- | gene-YPR042C_MUCL42920 | rna-NM_001184139.1_MUCL42920 | cds-NP_015367.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:650418-653645:- | gene-YPR042C_NCIM3186 | rna-NM_001184139.1_NCIM3186 | cds-NP_015367.1_NCIM3186 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:626991-630194:- | gene-YPR042C_NCYC1407 | rna-NM_001184139.1_NCYC1407 | cds-NP_015367.1_NCYC1407 | 98.7 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:633199-636417:- | gene-YPR042C_PE2H3 | rna-NM_001184139.1_PE2H3 | cds-NP_015367.1_PE2H3 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:632847-636065:- | gene-YPR042C_PE2H4 | rna-NM_001184139.1_PE2H4 | cds-NP_015367.1_PE2H4 | 99.6 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:650435-653662:- | gene-YPR042C_S288C | rna-NM_001184139.1_S288C | cds-NP_015367.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000026.1:47113-50334:+ | gene-YPR042C_SA1 | rna-NM_001184139.1_SA1 | cds-NP_015367.1_SA1 | 99.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:627642-630922:- | gene-YPR042C_ThermosaccDry | rna-NM_001184139.1_ThermosaccDry | cds-NP_015367.1_ThermosaccDry | 98.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:643861-647088:- | gene-YPR042C_VR1 | rna-NM_001184139.1_VR1 | cds-NP_015367.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:626959-630162:- | gene-YPR042C_ZTW1 | rna-NM_001184139.1_ZTW1 | cds-NP_015367.1_ZTW1 | 98.8 | 99.2 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:627744-630953:- | gene-YPR042C_Sparadoxus | rna-NM_001184139.1_Sparadoxus | cds-NP_015367.1_Sparadoxus | 88.0 | 98.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |