Gene name: PTP3
Reference locus (S288C): YER075C
Gene biotype: protein_coding
Description: Tyrosine-protein phosphatase 3; Phosphotyrosine-specific protein phosphatase; involved in the inactivation of mitogen-activated protein kinase (MAPK) during osmolarity sensing; dephosporylates Hog1p MAPK and regulates its localization; localized to the cytoplasm
Top 10 interactors (score): HOG1 (0.999); PBS2 (0.992); FUS3 (0.988); SLT2 (0.985); PTP2 (0.975); KSS1 (0.972); PTC1 (0.91); PTC2 (0.893); SSK1 (0.877); SSK2 (0.866); SSK22 (0.864); MSG5 (0.853); PTC3 (0.844); SKO1 (0.835); YVH1 (0.827); PTP1 (0.824); STE7 (0.816); YPD1 (0.814); YCH1 (0.789); STE11 (0.765)
Homologues (species, bitscore): PTPN18 (Homo sapiens, 105.1); Ptprz1 (Mus musculus, 94.7); ptpreb (Danio rerio, 100.5); ptpn21 (Xenopus tropicalis, 96.7); Ptp52F (Drosophila melanogaster, 89.4); Y41D4A.5 (Caenorhabditis elegans, 96.7); PTP1 (Arabidopsis thaliana, 95.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005299.1:302196-304985:- | gene-YER075C_AKU4011 | rna-NM_001178966.2_AKU4011 | cds-NP_010998.2_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000011.1:120822-123608:+ | gene-YER075C_BG1 | rna-NM_001178966.2_BG1 | cds-NP_010998.2_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005507.1:311784-314570:- | gene-YER075C_Bruggeman | rna-NM_001178966.2_Bruggeman | cds-NP_010998.2_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005523.1:305637-308432:- | gene-YER075C_CAT1 | rna-NM_001178966.2_CAT1 | cds-NP_010998.2_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005363.1:302051-304849:- | gene-YER075C_CBS1585 | rna-NM_001178966.2_CBS1585 | cds-NP_010998.2_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005347.1:304194-306980:- | gene-YER075C_CBS436 | rna-NM_001178966.2_CBS436 | cds-NP_010998.2_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005331.1:301518-304307:- | gene-YER075C_CBS6412 | rna-NM_001178966.2_CBS6412 | cds-NP_010998.2_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005315.1:307501-310296:- | gene-YER075C_CBS6413 | rna-NM_001178966.2_CBS6413 | cds-NP_010998.2_CBS6413 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001526.1:306200-308989:- | gene-YER075C_CENPK1137D | rna-NM_001178966.2_CENPK1137D | cds-NP_010998.2_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005475.1:302530-305328:- | gene-YER075C_EthanolRed | rna-NM_001178966.2_EthanolRed | cds-NP_010998.2_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005539.1:302975-305773:- | gene-YER075C_FaliES1 | rna-NM_001178966.2_FaliES1 | cds-NP_010998.2_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000153.1:18038-20824:- | gene-YER075C_JAY291 | rna-NM_001178966.2_JAY291 | cds-NP_010998.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005411.1:307180-309965:- | gene-YER075C_MUCL30387 | rna-NM_001178966.2_MUCL30387 | cds-NP_010998.2_MUCL30387 | 99.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005443.1:302851-305636:- | gene-YER075C_MUCL30388 | rna-NM_001178966.2_MUCL30388 | cds-NP_010998.2_MUCL30388 | 99.8 | 99.9 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005283.1:301078-303873:- | gene-YER075C_MUCL39482 | rna-NM_001178966.2_MUCL39482 | cds-NP_010998.2_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005427.1:308319-311105:- | gene-YER075C_MUCL42920 | rna-NM_001178966.2_MUCL42920 | cds-NP_010998.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011814.1:308412-311198:- | gene-YER075C_NCIM3186 | rna-NM_001178966.2_NCIM3186 | cds-NP_010998.2_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005267.1:306148-308938:- | gene-YER075C_NCYC1407 | rna-NM_001178966.2_NCYC1407 | cds-NP_010998.2_NCYC1407 | 99.1 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994144.1:316791-319577:- | gene-YER075C_PE2H3 | rna-NM_001178966.2_PE2H3 | cds-NP_010998.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999876.1:306732-309518:- | gene-YER075C_PE2H4 | rna-NM_001178966.2_PE2H4 | cds-NP_010998.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001137.3:308413-311199:- | gene-YER075C_S288C | rna-NM_001178966.2_S288C | cds-NP_010998.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000023.1:18051-20837:- | gene-YER075C_SA1 | rna-NM_001178966.2_SA1 | cds-NP_010998.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005491.1:303772-306570:- | gene-YER075C_ThermosaccDry | rna-NM_001178966.2_ThermosaccDry | cds-NP_010998.2_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005459.1:304472-307258:- | gene-YER075C_VR1 | rna-NM_001178966.2_VR1 | cds-NP_010998.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000009.1:300943-303729:- | gene-YER075C_ZTW1 | rna-NM_001178966.2_ZTW1 | cds-NP_010998.2_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047491.1:304355-307099:- | gene-YER075C_Sparadoxus | rna-NM_001178966.2_Sparadoxus | cds-NP_010998.2_Sparadoxus | 87.2 | 98.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |