Gene name: PTP1
Reference locus (S288C): YDL230W
Gene biotype: protein_coding
Description: Tyrosine-protein phosphatase 1; Phosphotyrosine-specific protein phosphatase; dephosphorylates a broad range of substrates in vivo, including Fpr3p; localized to the cytoplasm and the mitochondria; proposed to be a negative regulator of filamentation; Belongs to the protein-tyrosine phosphatase family. Non-receptor class subfamily
Top 10 interactors (score): HOG1 (0.999); PTC1 (0.874); PBS2 (0.851); PTC2 (0.837); PTP3 (0.824); SLT2 (0.823); FUS3 (0.82); MIH1 (0.763); PTC5 (0.754); MSG5 (0.742); SWE1 (0.712); GUT2 (0.708); PPQ1 (0.703); SDP1 (0.692); YCH1 (0.685); KDX1 (0.685); RSR1 (0.676); PTC3 (0.667); KSS1 (0.662); FPR3 (0.654)
Homologues (species, bitscore): PTPRS (Homo sapiens, 139.8); Ptprd (Mus musculus, 137.5); ptprsa (Danio rerio, 139.4); ptprf (Xenopus tropicalis, 137.9); Ptp10D (Drosophila melanogaster, 134.8); ptp-4 (Caenorhabditis elegans, 134.4); PTP1 (Arabidopsis thaliana, 117.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:25802-26809:+ | gene-YDL230W_AKU4011 | rna-NM_001180290.1_AKU4011 | cds-NP_010051.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000077.1:39643-40650:- | gene-YDL230W_BG1 | rna-NM_001180290.1_BG1 | cds-NP_010051.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:41521-42528:+ | gene-YDL230W_Bruggeman | rna-NM_001180290.1_Bruggeman | cds-NP_010051.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:44442-45449:+ | gene-YDL230W_CAT1 | rna-NM_001180290.1_CAT1 | cds-NP_010051.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:25177-26184:+ | gene-YDL230W_CBS1585 | rna-NM_001180290.1_CBS1585 | cds-NP_010051.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:41946-42953:+ | gene-YDL230W_CBS436 | rna-NM_001180290.1_CBS436 | cds-NP_010051.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:25680-26687:+ | gene-YDL230W_CBS6412 | rna-NM_001180290.1_CBS6412 | cds-NP_010051.1_CBS6412 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:42562-43569:+ | gene-YDL230W_CBS6413 | rna-NM_001180290.1_CBS6413 | cds-NP_010051.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:41668-42675:+ | gene-YDL230W_CENPK1137D | rna-NM_001180290.1_CENPK1137D | cds-NP_010051.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:39394-40401:+ | gene-YDL230W_EthanolRed | rna-NM_001180290.1_EthanolRed | cds-NP_010051.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:42696-43703:+ | gene-YDL230W_FaliES1 | rna-NM_001180290.1_FaliES1 | cds-NP_010051.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000011.1:822-1829:- | gene-YDL230W_JAY291 | rna-NM_001180290.1_JAY291 | cds-NP_010051.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:40817-41824:+ | gene-YDL230W_MUCL30387 | rna-NM_001180290.1_MUCL30387 | cds-NP_010051.1_MUCL30387 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:30384-31391:+ | gene-YDL230W_MUCL30388 | rna-NM_001180290.1_MUCL30388 | cds-NP_010051.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:25771-26778:+ | gene-YDL230W_MUCL39482 | rna-NM_001180290.1_MUCL39482 | cds-NP_010051.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:41958-42965:+ | gene-YDL230W_MUCL42920 | rna-NM_001180290.1_MUCL42920 | cds-NP_010051.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:42623-43630:+ | gene-YDL230W_NCIM3186 | rna-NM_001180290.1_NCIM3186 | cds-NP_010051.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:25727-26734:+ | gene-YDL230W_NCYC1407 | rna-NM_001180290.1_NCYC1407 | cds-NP_010051.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:33012-34019:+ | gene-YDL230W_PE2H3 | rna-NM_001180290.1_PE2H3 | cds-NP_010051.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:33022-34029:+ | gene-YDL230W_PE2H4 | rna-NM_001180290.1_PE2H4 | cds-NP_010051.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:42700-43707:+ | gene-YDL230W_S288C | rna-NM_001180290.1_S288C | cds-NP_010051.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000107.1:607-1614:- | gene-YDL230W_SA1 | rna-NM_001180290.1_SA1 | cds-NP_010051.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:42824-43831:+ | gene-YDL230W_ThermosaccDry | rna-NM_001180290.1_ThermosaccDry | cds-NP_010051.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:42751-43758:+ | gene-YDL230W_VR1 | rna-NM_001180290.1_VR1 | cds-NP_010051.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:41882-42889:+ | gene-YDL230W_ZTW1 | rna-NM_001180290.1_ZTW1 | cds-NP_010051.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:45175-46182:+ | gene-YDL230W_Sparadoxus | rna-NM_001180290.1_Sparadoxus | cds-NP_010051.1_Sparadoxus | 90.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |