Gene name: PTM1
Reference locus (S288C): YKL039W
Gene biotype: protein_coding
Description: Membrane protein PTM1; Protein of unknown function; copurifies with late Golgi vesicles containing the v-SNARE Tlg2p; PTM1 has a paralog, YHL017W, that arose from the whole genome duplication
Top 10 interactors (score): BNA3 (0.607); MAK11 (0.573); DUS3 (0.564); TLG2 (0.49); DCP1 (0.485); UGP1 (0.483); CCC2 (0.481); PCA1 (0.481); RRP9 (0.48); APC1 (0.473); LAC1 (0.459); ATM1 (0.453); FOX2 (0.45); CDC48 (0.434); ICE2 (0.403)
Homologues (species, bitscore): TMEM87B (Homo sapiens, 82.0); Tmem87b (Mus musculus, 77.4); TMEM87A (Danio rerio, 72.0); tmem87b (Xenopus tropicalis, 74.3); CG17660 (Drosophila melanogaster, 95.1); C52B9.4 (Caenorhabditis elegans, 91.3); AT2G01070 (Arabidopsis thaliana, 82.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:348639-350210:+ | gene-YKL039W_AKU4011 | rna-NM_001179605.1_AKU4011 | cds-NP_012885.2_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:293782-295353:- | gene-YKL039W_BG1 | rna-NM_001179605.1_BG1 | cds-NP_012885.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:367904-369475:+ | gene-YKL039W_Bruggeman | rna-NM_001179605.1_Bruggeman | cds-NP_012885.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:364082-365653:+ | gene-YKL039W_CAT1 | rna-NM_001179605.1_CAT1 | cds-NP_012885.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:361366-362937:+ | gene-YKL039W_CBS1585 | rna-NM_001179605.1_CBS1585 | cds-NP_012885.2_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:359484-361055:+ | gene-YKL039W_CBS436 | rna-NM_001179605.1_CBS436 | cds-NP_012885.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:345503-347074:+ | gene-YKL039W_CBS6412 | rna-NM_001179605.1_CBS6412 | cds-NP_012885.2_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:361331-362902:+ | gene-YKL039W_CBS6413 | rna-NM_001179605.1_CBS6413 | cds-NP_012885.2_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:362280-363851:+ | gene-YKL039W_CENPK1137D | rna-NM_001179605.1_CENPK1137D | cds-NP_012885.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:359321-360892:+ | gene-YKL039W_EthanolRed | rna-NM_001179605.1_EthanolRed | cds-NP_012885.2_EthanolRed | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:360140-361711:+ | gene-YKL039W_FaliES1 | rna-NM_001179605.1_FaliES1 | cds-NP_012885.2_FaliES1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000080.1:65046-66617:+ | gene-YKL039W_JAY291 | rna-NM_001179605.1_JAY291 | cds-NP_012885.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:368804-370375:+ | gene-YKL039W_MUCL30387 | rna-NM_001179605.1_MUCL30387 | cds-NP_012885.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:363689-365260:+ | gene-YKL039W_MUCL30388 | rna-NM_001179605.1_MUCL30388 | cds-NP_012885.2_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:360662-362233:+ | gene-YKL039W_MUCL39482 | rna-NM_001179605.1_MUCL39482 | cds-NP_012885.2_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:365521-367092:+ | gene-YKL039W_MUCL42920 | rna-NM_001179605.1_MUCL42920 | cds-NP_012885.2_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:362611-364182:+ | gene-YKL039W_NCIM3186 | rna-NM_001179605.1_NCIM3186 | cds-NP_012885.2_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:360861-362432:+ | gene-YKL039W_NCYC1407 | rna-NM_001179605.1_NCYC1407 | cds-NP_012885.2_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:385392-386963:+ | gene-YKL039W_PE2H3 | rna-NM_001179605.1_PE2H3 | cds-NP_012885.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:370127-371698:+ | gene-YKL039W_PE2H4 | rna-NM_001179605.1_PE2H4 | cds-NP_012885.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:362622-364193:+ | gene-YKL039W_S288C | rna-NM_001179605.1_S288C | cds-NP_012885.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:40733-42304:+ | gene-YKL039W_SA1 | rna-NM_001179605.1_SA1 | cds-NP_012885.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:361327-362898:+ | gene-YKL039W_ThermosaccDry | rna-NM_001179605.1_ThermosaccDry | cds-NP_012885.2_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:360463-362034:+ | gene-YKL039W_VR1 | rna-NM_001179605.1_VR1 | cds-NP_012885.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:359340-360911:+ | gene-YKL039W_ZTW1 | rna-NM_001179605.1_ZTW1 | cds-NP_012885.2_ZTW1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:378589-380160:+ | gene-YKL039W_Sparadoxus | rna-NM_001179605.1_Sparadoxus | cds-NP_012885.2_Sparadoxus | 91.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |