Gene name: PTI1
Reference locus (S288C): YGR156W
Gene biotype: protein_coding
Description: Protein PTI1; Essential component of CPF (cleavage and polyadenylation factor); involved in 3' end formation of snoRNA and mRNA; interacts directly with Pta1p; relocalizes to the cytosol in response to hypoxia; similar to mammalian Cleavage-Stimulation Factor CstF-64
Top 10 interactors (score): GLC7 (0.999); SWD2 (0.999); SYC1 (0.999); FIP1 (0.999); CFT1 (0.999); YTH1 (0.999); SSU72 (0.999); PFS2 (0.999); CFT2 (0.999); MPE1 (0.999); REF2 (0.999); PTA1 (0.999); PAP1 (0.999); YSH1 (0.999); RNA14 (0.996); RNA15 (0.951); PCF11 (0.951); CLP1 (0.885); HRP1 (0.822); HCA4 (0.771)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:780159-781436:+ | gene-YGR156W_AKU4011 | rna-NM_001181285.1_AKU4011 | cds-NP_011672.1_AKU4011 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000021.1:58309-59586:+ | gene-YGR156W_BG1 | rna-NM_001181285.1_BG1 | cds-NP_011672.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:785864-787141:+ | gene-YGR156W_Bruggeman | rna-NM_001181285.1_Bruggeman | cds-NP_011672.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:781930-783207:+ | gene-YGR156W_CAT1 | rna-NM_001181285.1_CAT1 | cds-NP_011672.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:780893-782170:+ | gene-YGR156W_CBS1585 | rna-NM_001181285.1_CBS1585 | cds-NP_011672.1_CBS1585 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:784784-786061:+ | gene-YGR156W_CBS436 | rna-NM_001181285.1_CBS436 | cds-NP_011672.1_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:771913-773190:+ | gene-YGR156W_CBS6412 | rna-NM_001181285.1_CBS6412 | cds-NP_011672.1_CBS6412 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:777751-779028:+ | gene-YGR156W_CBS6413 | rna-NM_001181285.1_CBS6413 | cds-NP_011672.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:800279-801556:+ | gene-YGR156W_CENPK1137D | rna-NM_001181285.1_CENPK1137D | cds-NP_011672.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:766462-767739:+ | gene-YGR156W_EthanolRed | rna-NM_001181285.1_EthanolRed | cds-NP_011672.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:770666-771943:+ | gene-YGR156W_FaliES1 | rna-NM_001181285.1_FaliES1 | cds-NP_011672.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000112.1:13074-14351:+ | gene-YGR156W_JAY291 | rna-NM_001181285.1_JAY291 | cds-NP_011672.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:783603-784880:+ | gene-YGR156W_MUCL30387 | rna-NM_001181285.1_MUCL30387 | cds-NP_011672.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:783299-784576:+ | gene-YGR156W_MUCL30388 | rna-NM_001181285.1_MUCL30388 | cds-NP_011672.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:776460-777737:+ | gene-YGR156W_MUCL39482 | rna-NM_001181285.1_MUCL39482 | cds-NP_011672.1_MUCL39482 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:791411-792688:+ | gene-YGR156W_MUCL42920 | rna-NM_001181285.1_MUCL42920 | cds-NP_011672.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:800546-801823:+ | gene-YGR156W_NCIM3186 | rna-NM_001181285.1_NCIM3186 | cds-NP_011672.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:771569-772846:+ | gene-YGR156W_NCYC1407 | rna-NM_001181285.1_NCYC1407 | cds-NP_011672.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:790777-792054:+ | gene-YGR156W_PE2H3 | rna-NM_001181285.1_PE2H3 | cds-NP_011672.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:795887-797164:+ | gene-YGR156W_PE2H4 | rna-NM_001181285.1_PE2H4 | cds-NP_011672.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:800546-801823:+ | gene-YGR156W_S288C | rna-NM_001181285.1_S288C | cds-NP_011672.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000035.1:35695-36972:+ | gene-YGR156W_SA1 | rna-NM_001181285.1_SA1 | cds-NP_011672.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:791173-792450:+ | gene-YGR156W_ThermosaccDry | rna-NM_001181285.1_ThermosaccDry | cds-NP_011672.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:895677-896954:+ | gene-YGR156W_VR1 | rna-NM_001181285.1_VR1 | cds-NP_011672.1_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000016.1:93114-94391:+ | gene-YGR156W_ZTW1 | rna-NM_001181285.1_ZTW1 | cds-NP_011672.1_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:780717-781994:+ | gene-YGR156W_Sparadoxus | rna-NM_001181285.1_Sparadoxus | cds-NP_011672.1_Sparadoxus | 93.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |