Gene name: PTH2
Reference locus (S288C): YBL057C
Gene biotype: protein_coding
Description: Peptidyl-trna hydrolase, pth2 family; Peptidyl-tRNA hydrolase 2; One of two mitochondrially-localized peptidyl-tRNA hydrolases; negatively regulates the ubiquitin-proteasome pathway via interactions with ubiquitin-like ubiquitin-associated proteins; dispensable for cell growth; see also PTH1
Top 10 interactors (score): DSK2 (0.915); IRC22 (0.827); PTH1 (0.818); ERB1 (0.706); NIT3 (0.7); MSD1 (0.696); SEC11 (0.692); TPC1 (0.676); PTH4 (0.675); CBR1 (0.655); AIM11 (0.652); MIC26 (0.618); CCT4 (0.592); RAD23 (0.57); TCD2 (0.569); BOL1 (0.568); SCM4 (0.562); UFD2 (0.539); UTP6 (0.508); ADP1 (0.497)
Homologues (species, bitscore): PTRH2 (Homo sapiens, 131.0); Ptrh2 (Mus musculus, 123.2); ptrh2 (Danio rerio, 122.1); ptrh2 (Xenopus tropicalis, 124.4); CG1307 (Drosophila melanogaster, 91.3); C24G6.8 (Caenorhabditis elegans, 70.9); AT4G32900 (Arabidopsis thaliana, 107.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:106385-107011:- | gene-YBL057C_AKU4011 | rna-NM_001178297.2_AKU4011 | cds-NP_009496.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:97238-97864:- | gene-YBL057C_BG1 | rna-NM_001178297.2_BG1 | cds-NP_009496.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:106999-107625:- | gene-YBL057C_Bruggeman | rna-NM_001178297.2_Bruggeman | cds-NP_009496.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:109637-110263:- | gene-YBL057C_CAT1 | rna-NM_001178297.2_CAT1 | cds-NP_009496.2_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:98952-99578:- | gene-YBL057C_CBS1585 | rna-NM_001178297.2_CBS1585 | cds-NP_009496.2_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:107458-108084:- | gene-YBL057C_CBS436 | rna-NM_001178297.2_CBS436 | cds-NP_009496.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:97458-98084:- | gene-YBL057C_CBS6412 | rna-NM_001178297.2_CBS6412 | cds-NP_009496.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:104530-105156:- | gene-YBL057C_CBS6413 | rna-NM_001178297.2_CBS6413 | cds-NP_009496.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:106562-107188:- | gene-YBL057C_CENPK1137D | rna-NM_001178297.2_CENPK1137D | cds-NP_009496.2_CENPK1137D | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:120384-121010:- | gene-YBL057C_EthanolRed | rna-NM_001178297.2_EthanolRed | cds-NP_009496.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:121237-121863:- | gene-YBL057C_FaliES1 | rna-NM_001178297.2_FaliES1 | cds-NP_009496.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:23852-24478:- | gene-YBL057C_JAY291 | rna-NM_001178297.2_JAY291 | cds-NP_009496.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:106373-106999:- | gene-YBL057C_MUCL30387 | rna-NM_001178297.2_MUCL30387 | cds-NP_009496.2_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:107652-108278:- | gene-YBL057C_MUCL30388 | rna-NM_001178297.2_MUCL30388 | cds-NP_009496.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:99133-99759:- | gene-YBL057C_MUCL39482 | rna-NM_001178297.2_MUCL39482 | cds-NP_009496.2_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:105966-106592:- | gene-YBL057C_MUCL42920 | rna-NM_001178297.2_MUCL42920 | cds-NP_009496.2_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:112598-113224:- | gene-YBL057C_NCIM3186 | rna-NM_001178297.2_NCIM3186 | cds-NP_009496.2_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:100275-100901:- | gene-YBL057C_NCYC1407 | rna-NM_001178297.2_NCYC1407 | cds-NP_009496.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:106528-107154:- | gene-YBL057C_PE2H3 | rna-NM_001178297.2_PE2H3 | cds-NP_009496.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:104172-104798:- | gene-YBL057C_PE2H4 | rna-NM_001178297.2_PE2H4 | cds-NP_009496.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:112801-113427:- | gene-YBL057C_S288C | rna-NM_001178297.2_S288C | cds-NP_009496.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:96907-97533:- | gene-YBL057C_SA1 | rna-NM_001178297.2_SA1 | cds-NP_009496.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:121198-121824:- | gene-YBL057C_ThermosaccDry | rna-NM_001178297.2_ThermosaccDry | cds-NP_009496.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:103362-103988:- | gene-YBL057C_VR1 | rna-NM_001178297.2_VR1 | cds-NP_009496.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:97914-98540:- | gene-YBL057C_ZTW1 | rna-NM_001178297.2_ZTW1 | cds-NP_009496.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:132577-133201:- | gene-YBL057C_Sparadoxus | rna-NM_001178297.2_Sparadoxus | cds-NP_009496.2_Sparadoxus | 87.8 | 99.5 | Verified | 1 | 1 | 0 | False | False | True | False | False |