Gene name: PTH1
Reference locus (S288C): YHR189W
Gene biotype: protein_coding
Description: Peptidyl-trna hydrolase, pth1 family; Peptidyl-tRNA hydrolase; One of two mitochondrially-localized peptidyl-tRNA hydrolases; dispensable for respiratory growth on rich medium, but required for respiratory growth on minimal medium; see also PTH2
Top 10 interactors (score): PTH2 (0.818); VMS1 (0.807); RQC2 (0.661); SLM5 (0.621); AIM11 (0.573); YPS7 (0.567); POL30 (0.56); AGA2 (0.559); RQC1 (0.55); RRF1 (0.544); EFM5 (0.537); SLX8 (0.535); MAG2 (0.535); SED1 (0.507); PHR1 (0.501); FUN12 (0.499); TCD2 (0.497); MRX8 (0.496); PTH4 (0.494); NOB1 (0.493)
Homologues (species, bitscore): PTRH1 (Homo sapiens, 63.9); Ptrh1 (Mus musculus, 63.2); ptrh1 (Danio rerio, 75.1); ptrh1 (Xenopus tropicalis, 67.8); AT5G19830 (Arabidopsis thaliana, 80.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005302.1:471108-471680:+ | gene-YHR189W_AKU4011 | rna-NM_001179320.3_AKU4011 | cds-NP_012059.3_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000141.1:46069-46641:- | gene-YHR189W_BG1 | rna-NM_001179320.3_BG1 | cds-NP_012059.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005510.1:478350-478922:+ | gene-YHR189W_Bruggeman | rna-NM_001179320.3_Bruggeman | cds-NP_012059.3_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005526.1:474625-475197:+ | gene-YHR189W_CAT1 | rna-NM_001179320.3_CAT1 | cds-NP_012059.3_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005366.1:470560-471132:+ | gene-YHR189W_CBS1585 | rna-NM_001179320.3_CBS1585 | cds-NP_012059.3_CBS1585 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005350.1:468500-469072:+ | gene-YHR189W_CBS436 | rna-NM_001179320.3_CBS436 | cds-NP_012059.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005334.1:470659-471231:+ | gene-YHR189W_CBS6412 | rna-NM_001179320.3_CBS6412 | cds-NP_012059.3_CBS6412 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005318.1:471950-472522:+ | gene-YHR189W_CBS6413 | rna-NM_001179320.3_CBS6413 | cds-NP_012059.3_CBS6413 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001529.1:477216-477788:+ | gene-YHR189W_CENPK1137D | rna-NM_001179320.3_CENPK1137D | cds-NP_012059.3_CENPK1137D | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005478.1:529647-530219:+ | gene-YHR189W_EthanolRed | rna-NM_001179320.3_EthanolRed | cds-NP_012059.3_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005542.1:472091-472663:+ | gene-YHR189W_FaliES1 | rna-NM_001179320.3_FaliES1 | cds-NP_012059.3_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000147.1:17251-17823:+ | gene-YHR189W_JAY291 | rna-NM_001179320.3_JAY291 | cds-NP_012059.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005414.1:479676-480248:+ | gene-YHR189W_MUCL30387 | rna-NM_001179320.3_MUCL30387 | cds-NP_012059.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005446.1:479099-479671:+ | gene-YHR189W_MUCL30388 | rna-NM_001179320.3_MUCL30388 | cds-NP_012059.3_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005286.1:470471-471043:+ | gene-YHR189W_MUCL39482 | rna-NM_001179320.3_MUCL39482 | cds-NP_012059.3_MUCL39482 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005430.1:478415-478987:+ | gene-YHR189W_MUCL42920 | rna-NM_001179320.3_MUCL42920 | cds-NP_012059.3_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011817.1:483910-484482:+ | gene-YHR189W_NCIM3186 | rna-NM_001179320.3_NCIM3186 | cds-NP_012059.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005270.1:472934-473506:+ | gene-YHR189W_NCYC1407 | rna-NM_001179320.3_NCYC1407 | cds-NP_012059.3_NCYC1407 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994147.1:472090-472662:+ | gene-YHR189W_PE2H3 | rna-NM_001179320.3_PE2H3 | cds-NP_012059.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999879.1:479517-480089:+ | gene-YHR189W_PE2H4 | rna-NM_001179320.3_PE2H4 | cds-NP_012059.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001140.6:484028-484600:+ | gene-YHR189W_S288C | rna-NM_001179320.3_S288C | cds-NP_012059.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000079.1:32177-32749:+ | gene-YHR189W_SA1 | rna-NM_001179320.3_SA1 | cds-NP_012059.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005494.1:473174-473746:+ | gene-YHR189W_ThermosaccDry | rna-NM_001179320.3_ThermosaccDry | cds-NP_012059.3_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005462.1:482392-482964:+ | gene-YHR189W_VR1 | rna-NM_001179320.3_VR1 | cds-NP_012059.3_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000017.1:463409-463981:+ | gene-YHR189W_ZTW1 | rna-NM_001179320.3_ZTW1 | cds-NP_012059.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047494.1:470113-470685:+ | gene-YHR189W_Sparadoxus | rna-NM_001179320.3_Sparadoxus | cds-NP_012059.3_Sparadoxus | 90.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |