Gene name: PTA1
Reference locus (S288C): YAL043C
Gene biotype: protein_coding
Description: Pre-tRNA-processing protein PTA1; Subunit of holo-CPF; holo-CPF is a multiprotein complex and functional homolog of mammalian CPSF, required for the cleavage and polyadenylation of mRNA and snoRNA 3' ends; involved in pre-tRNA processing; binds to the phosphorylated CTD of RNAPII
Top 10 interactors (score): YTH1 (0.999); MPE1 (0.999); RNA15 (0.999); CFT1 (0.999); FIP1 (0.999); PFS2 (0.999); SSU72 (0.999); SYC1 (0.999); REF2 (0.999); PAP1 (0.999); PTI1 (0.999); YSH1 (0.999); RNA14 (0.999); GLC7 (0.999); SWD2 (0.999); CFT2 (0.999); PCF11 (0.995); TAF1 (0.965); SNF5 (0.962); CLP1 (0.961)
Homologues (species, bitscore): SYMPK (Homo sapiens, 50.1); sympk (Xenopus tropicalis, 54.3); ESP4 (Arabidopsis thaliana, 50.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:43840-46197:- | gene-YAL043C_AKU4011 | rna-NM_001178188.1_AKU4011 | cds-NP_009356.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:30907-33264:- | gene-YAL043C_BG1 | rna-NM_001178188.1_BG1 | cds-NP_009356.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:58298-60655:- | gene-YAL043C_Bruggeman | rna-NM_001178188.1_Bruggeman | cds-NP_009356.1_Bruggeman | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:45057-47414:- | gene-YAL043C_CAT1 | rna-NM_001178188.1_CAT1 | cds-NP_009356.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:56861-59218:- | gene-YAL043C_CBS1585 | rna-NM_001178188.1_CBS1585 | cds-NP_009356.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:57103-59460:- | gene-YAL043C_CBS436 | rna-NM_001178188.1_CBS436 | cds-NP_009356.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:43006-45363:- | gene-YAL043C_CBS6412 | rna-NM_001178188.1_CBS6412 | cds-NP_009356.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:55124-57481:- | gene-YAL043C_CBS6413 | rna-NM_001178188.1_CBS6413 | cds-NP_009356.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:58751-61108:- | gene-YAL043C_CENPK1137D | rna-NM_001178188.1_CENPK1137D | cds-NP_009356.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:45254-47611:- | gene-YAL043C_EthanolRed | rna-NM_001178188.1_EthanolRed | cds-NP_009356.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:59196-61553:- | gene-YAL043C_FaliES1 | rna-NM_001178188.1_FaliES1 | cds-NP_009356.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:31146-33503:- | gene-YAL043C_JAY291 | rna-NM_001178188.1_JAY291 | cds-NP_009356.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:59802-62159:- | gene-YAL043C_MUCL30387 | rna-NM_001178188.1_MUCL30387 | cds-NP_009356.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:56349-58706:- | gene-YAL043C_MUCL30388 | rna-NM_001178188.1_MUCL30388 | cds-NP_009356.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:55665-58022:- | gene-YAL043C_MUCL39482 | rna-NM_001178188.1_MUCL39482 | cds-NP_009356.1_MUCL39482 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:58007-60364:- | gene-YAL043C_MUCL42920 | rna-NM_001178188.1_MUCL42920 | cds-NP_009356.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:58572-60929:- | gene-YAL043C_NCIM3186 | rna-NM_001178188.1_NCIM3186 | cds-NP_009356.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:43530-45887:- | gene-YAL043C_NCYC1407 | rna-NM_001178188.1_NCYC1407 | cds-NP_009356.1_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:45410-47767:- | gene-YAL043C_PE2H3 | rna-NM_001178188.1_PE2H3 | cds-NP_009356.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:45129-47486:- | gene-YAL043C_PE2H4 | rna-NM_001178188.1_PE2H4 | cds-NP_009356.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:58695-61052:- | gene-YAL043C_S288C | rna-NM_001178188.1_S288C | cds-NP_009356.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000084.1:33304-35661:- | gene-YAL043C_SA1 | rna-NM_001178188.1_SA1 | cds-NP_009356.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:59406-61763:- | gene-YAL043C_ThermosaccDry | rna-NM_001178188.1_ThermosaccDry | cds-NP_009356.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:60669-63026:- | gene-YAL043C_VR1 | rna-NM_001178188.1_VR1 | cds-NP_009356.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:31215-33572:- | gene-YAL043C_ZTW1 | rna-NM_001178188.1_ZTW1 | cds-NP_009356.1_ZTW1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:48896-51253:- | gene-YAL043C_Sparadoxus | rna-NM_001178188.1_Sparadoxus | cds-NP_009356.1_Sparadoxus | 90.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |