Gene name: PSY4
Reference locus (S288C): YBL046W
Gene biotype: protein_coding
Description: Regulatory subunit of protein phosphatase PP4; presence of Psy4p in the PP4 complex (along with catalytic subunit Pph3p and Psy2p) is required for dephosphorylation of the histone variant H2AX, but not for dephosphorylation of Rad53p, during recovery from the DNA damage checkpoint; localization is cell-cycle dependent and regulated by Cdc28p phosphorylation; required for cisplatin resistance; homolog of mammalian R2
Top 10 interactors (score): PSY2 (0.999); PPH3 (0.997); PPH21 (0.957); RRD2 (0.936); SIT4 (0.936); SDS22 (0.928); CDC55 (0.918); GLC7 (0.917); TPD3 (0.91); CMP2 (0.903); GAC1 (0.9); CNB1 (0.9); CNA1 (0.9); SPT5 (0.9); REG1 (0.9); RRD1 (0.867); HTA1 (0.829); HSM3 (0.747); GIP1 (0.732); GIP2 (0.73)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:126013-127365:+ | gene-YBL046W_AKU4011 | rna-NM_001178286.1_AKU4011 | cds-NP_009507.1_AKU4011 | 97.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:116857-118209:+ | gene-YBL046W_BG1 | rna-NM_001178286.1_BG1 | cds-NP_009507.1_BG1 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:126619-127971:+ | gene-YBL046W_Bruggeman | rna-NM_001178286.1_Bruggeman | cds-NP_009507.1_Bruggeman | 97.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:129251-130603:+ | gene-YBL046W_CAT1 | rna-NM_001178286.1_CAT1 | cds-NP_009507.1_CAT1 | 97.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:118573-119898:+ | gene-YBL046W_CBS1585 | rna-NM_001178286.1_CBS1585 | cds-NP_009507.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:127080-128432:+ | gene-YBL046W_CBS436 | rna-NM_001178286.1_CBS436 | cds-NP_009507.1_CBS436 | 97.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:116718-118070:+ | gene-YBL046W_CBS6412 | rna-NM_001178286.1_CBS6412 | cds-NP_009507.1_CBS6412 | 97.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:124150-125475:+ | gene-YBL046W_CBS6413 | rna-NM_001178286.1_CBS6413 | cds-NP_009507.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:126183-127535:+ | gene-YBL046W_CENPK1137D | rna-NM_001178286.1_CENPK1137D | cds-NP_009507.1_CENPK1137D | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:140003-141328:+ | gene-YBL046W_EthanolRed | rna-NM_001178286.1_EthanolRed | cds-NP_009507.1_EthanolRed | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:140856-142181:+ | gene-YBL046W_FaliES1 | rna-NM_001178286.1_FaliES1 | cds-NP_009507.1_FaliES1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000072.1:43474-44826:+ | gene-YBL046W_JAY291 | rna-NM_001178286.1_JAY291 | cds-NP_009507.1_JAY291 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:125995-127347:+ | gene-YBL046W_MUCL30387 | rna-NM_001178286.1_MUCL30387 | cds-NP_009507.1_MUCL30387 | 97.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:127268-128620:+ | gene-YBL046W_MUCL30388 | rna-NM_001178286.1_MUCL30388 | cds-NP_009507.1_MUCL30388 | 97.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:118753-120078:+ | gene-YBL046W_MUCL39482 | rna-NM_001178286.1_MUCL39482 | cds-NP_009507.1_MUCL39482 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:125586-126938:+ | gene-YBL046W_MUCL42920 | rna-NM_001178286.1_MUCL42920 | cds-NP_009507.1_MUCL42920 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:132221-133546:+ | gene-YBL046W_NCIM3186 | rna-NM_001178286.1_NCIM3186 | cds-NP_009507.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:119898-121223:+ | gene-YBL046W_NCYC1407 | rna-NM_001178286.1_NCYC1407 | cds-NP_009507.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:126151-127503:+ | gene-YBL046W_PE2H3 | rna-NM_001178286.1_PE2H3 | cds-NP_009507.1_PE2H3 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:123795-125147:+ | gene-YBL046W_PE2H4 | rna-NM_001178286.1_PE2H4 | cds-NP_009507.1_PE2H4 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:132424-133749:+ | gene-YBL046W_S288C | rna-NM_001178286.1_S288C | cds-NP_009507.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000051.1:17006-18358:+ | gene-YBL046W_SA1 | rna-NM_001178286.1_SA1 | cds-NP_009507.1_SA1 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:140817-142142:+ | gene-YBL046W_ThermosaccDry | rna-NM_001178286.1_ThermosaccDry | cds-NP_009507.1_ThermosaccDry | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:122985-124337:+ | gene-YBL046W_VR1 | rna-NM_001178286.1_VR1 | cds-NP_009507.1_VR1 | 97.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:117526-118851:+ | gene-YBL046W_ZTW1 | rna-NM_001178286.1_ZTW1 | cds-NP_009507.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:152212-153570:+ | gene-YBL046W_Sparadoxus | rna-NM_001178286.1_Sparadoxus | cds-NP_009507.1_Sparadoxus | 86.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |