Gene name: PSY2
Reference locus (S288C): YNL201C
Gene biotype: protein_coding
Description: Subunit of protein phosphatase PP4 complex; Pph3p and Psy2p form the active complex, Psy4p may provide additional substrate specificity; regulates recovery from the DNA damage checkpoint, the gene conversion- and single-strand annealing-mediated pathways of meiotic double-strand break repair and efficient Non-Homologous End-Joining (NHEJ) pathway; Pph3p and Psy2p localize to foci on meiotic chromosomes; putative homolog of mammalian R3
Top 10 interactors (score): PSY4 (0.999); PPH3 (0.999); PPG1 (0.988); PPH21 (0.981); RAD53 (0.975); MEC1 (0.971); RRD1 (0.968); GLC7 (0.966); TPD3 (0.96); SIT4 (0.955); RRD2 (0.947); RFA2 (0.945); CDC55 (0.94); SDS22 (0.938); CMP2 (0.934); CNA1 (0.929); CNB1 (0.909); SPT5 (0.901); REG1 (0.9); GAC1 (0.9)
Homologues (species, bitscore): SMEK1 (Homo sapiens, 188.7); Smek1 (Mus musculus, 194.9); smek1 (Danio rerio, 181.0); ppp4r3a (Xenopus tropicalis, 188.0); flfl (Drosophila melanogaster, 178.7); smk-1 (Caenorhabditis elegans, 118.2); AT3G06670 (Arabidopsis thaliana, 132.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:254404-256980:- | gene-YNL201C_AKU4011 | rna-NM_001183039.1_AKU4011 | cds-NP_014198.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:158355-160931:- | gene-YNL201C_BG1 | rna-NM_001183039.1_BG1 | cds-NP_014198.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:264454-267030:- | gene-YNL201C_Bruggeman | rna-NM_001183039.1_Bruggeman | cds-NP_014198.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:306696-309272:- | gene-YNL201C_CAT1 | rna-NM_001183039.1_CAT1 | cds-NP_014198.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:255050-257626:- | gene-YNL201C_CBS1585 | rna-NM_001183039.1_CBS1585 | cds-NP_014198.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:323339-325915:- | gene-YNL201C_CBS436 | rna-NM_001183039.1_CBS436 | cds-NP_014198.1_CBS436 | 99.4 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:250462-253038:- | gene-YNL201C_CBS6412 | rna-NM_001183039.1_CBS6412 | cds-NP_014198.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:251483-254059:- | gene-YNL201C_CBS6413 | rna-NM_001183039.1_CBS6413 | cds-NP_014198.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:254475-257051:- | gene-YNL201C_CENPK1137D | rna-NM_001183039.1_CENPK1137D | cds-NP_014198.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:251372-253948:- | gene-YNL201C_EthanolRed | rna-NM_001183039.1_EthanolRed | cds-NP_014198.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:247285-249861:- | gene-YNL201C_FaliES1 | rna-NM_001183039.1_FaliES1 | cds-NP_014198.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:68503-71079:+ | gene-YNL201C_JAY291 | rna-NM_001183039.1_JAY291 | cds-NP_014198.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:260240-262816:- | gene-YNL201C_MUCL30387 | rna-NM_001183039.1_MUCL30387 | cds-NP_014198.1_MUCL30387 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:294607-297183:- | gene-YNL201C_MUCL30388 | rna-NM_001183039.1_MUCL30388 | cds-NP_014198.1_MUCL30388 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:252289-254865:- | gene-YNL201C_MUCL39482 | rna-NM_001183039.1_MUCL39482 | cds-NP_014198.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:254656-257232:- | gene-YNL201C_MUCL42920 | rna-NM_001183039.1_MUCL42920 | cds-NP_014198.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:260596-263172:- | gene-YNL201C_NCIM3186 | rna-NM_001183039.1_NCIM3186 | cds-NP_014198.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:254379-256955:- | gene-YNL201C_NCYC1407 | rna-NM_001183039.1_NCYC1407 | cds-NP_014198.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:251292-253868:- | gene-YNL201C_PE2H3 | rna-NM_001183039.1_PE2H3 | cds-NP_014198.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:250680-253256:- | gene-YNL201C_PE2H4 | rna-NM_001183039.1_PE2H4 | cds-NP_014198.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:260627-263203:- | gene-YNL201C_S288C | rna-NM_001183039.1_S288C | cds-NP_014198.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:150395-152971:+ | gene-YNL201C_SA1 | rna-NM_001183039.1_SA1 | cds-NP_014198.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:248142-250718:- | gene-YNL201C_ThermosaccDry | rna-NM_001183039.1_ThermosaccDry | cds-NP_014198.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:266646-269222:- | gene-YNL201C_VR1 | rna-NM_001183039.1_VR1 | cds-NP_014198.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:157975-160551:- | gene-YNL201C_ZTW1 | rna-NM_001183039.1_ZTW1 | cds-NP_014198.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:258491-261067:- | gene-YNL201C_Sparadoxus | rna-NM_001183039.1_Sparadoxus | cds-NP_014198.1_Sparadoxus | 90.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |