Gene name: PSP2
Reference locus (S288C): YML017W
Gene biotype: protein_coding
Description: Protein PSP2; Asn rich cytoplasmic protein that contains RGG motifs; high-copy suppressor of group II intron-splicing defects of a mutation in MRS2 and of a conditional mutation in POL1 (DNA polymerase alpha); possible role in mitochondrial mRNA splicing
Top 10 interactors (score): PSP1 (0.908); POL1 (0.836); DED1 (0.806); RAD24 (0.787); TIF4632 (0.769); YBR219C (0.712); SKG1 (0.699); YKL033W-A (0.699); YGR237C (0.693); ECM9 (0.677); CAF20 (0.666); PMD1 (0.617); RRT8 (0.617); PBY1 (0.594); YPR089W (0.574); PIR5 (0.573); ESL2 (0.572); DBP1 (0.569); TPH3 (0.567); EDC3 (0.544)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:286180-288317:+ | gene-YML017W_AKU4011 | rna-NM_001182375.1_AKU4011 | cds-NP_013695.2_AKU4011 | 99.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:254550-256686:- | gene-YML017W_BG1 | rna-NM_001182375.1_BG1 | cds-NP_013695.2_BG1 | 98.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:226142-228278:+ | gene-YML017W_Bruggeman | rna-NM_001182375.1_Bruggeman | cds-NP_013695.2_Bruggeman | 98.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:228652-230788:+ | gene-YML017W_CAT1 | rna-NM_001182375.1_CAT1 | cds-NP_013695.2_CAT1 | 98.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:219130-221270:+ | gene-YML017W_CBS1585 | rna-NM_001182375.1_CBS1585 | cds-NP_013695.2_CBS1585 | 99.6 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:224672-226810:+ | gene-YML017W_CBS436 | rna-NM_001182375.1_CBS436 | cds-NP_013695.2_CBS436 | 99.1 | 99.8 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:332867-335004:+ | gene-YML017W_CBS6412 | rna-NM_001182375.1_CBS6412 | cds-NP_013695.2_CBS6412 | 99.5 | 99.6 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:218387-220524:+ | gene-YML017W_CBS6413 | rna-NM_001182375.1_CBS6413 | cds-NP_013695.2_CBS6413 | 99.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:231109-233252:+ | gene-YML017W_CENPK1137D | rna-NM_001182375.1_CENPK1137D | cds-NP_013695.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:219154-221300:+ | gene-YML017W_EthanolRed | rna-NM_001182375.1_EthanolRed | cds-NP_013695.2_EthanolRed | 99.2 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:222118-224264:+ | gene-YML017W_FaliES1 | rna-NM_001182375.1_FaliES1 | cds-NP_013695.2_FaliES1 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000033.1:212655-214791:- | gene-YML017W_JAY291 | rna-NM_001182375.1_JAY291 | cds-NP_013695.2_JAY291 | 98.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:223872-226009:+ | gene-YML017W_MUCL30387 | rna-NM_001182375.1_MUCL30387 | cds-NP_013695.2_MUCL30387 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:228541-230677:+ | gene-YML017W_MUCL30388 | rna-NM_001182375.1_MUCL30388 | cds-NP_013695.2_MUCL30388 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:219415-221552:+ | gene-YML017W_MUCL39482 | rna-NM_001182375.1_MUCL39482 | cds-NP_013695.2_MUCL39482 | 99.4 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:224979-227133:+ | gene-YML017W_MUCL42920 | rna-NM_001182375.1_MUCL42920 | cds-NP_013695.2_MUCL42920 | 97.2 | 99.6 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:236542-238685:+ | gene-YML017W_NCIM3186 | rna-NM_001182375.1_NCIM3186 | cds-NP_013695.2_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:219356-221493:+ | gene-YML017W_NCYC1407 | rna-NM_001182375.1_NCYC1407 | cds-NP_013695.2_NCYC1407 | 99.5 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:225263-227399:+ | gene-YML017W_PE2H3 | rna-NM_001182375.1_PE2H3 | cds-NP_013695.2_PE2H3 | 98.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:231358-233494:+ | gene-YML017W_PE2H4 | rna-NM_001182375.1_PE2H4 | cds-NP_013695.2_PE2H4 | 98.8 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:236588-238731:+ | gene-YML017W_S288C | rna-NM_001182375.1_S288C | cds-NP_013695.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000088.1:122-2258:- | gene-YML017W_SA1 | rna-NM_001182375.1_SA1 | cds-NP_013695.2_SA1 | 98.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:219191-221337:+ | gene-YML017W_ThermosaccDry | rna-NM_001182375.1_ThermosaccDry | cds-NP_013695.2_ThermosaccDry | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:223204-225340:+ | gene-YML017W_VR1 | rna-NM_001182375.1_VR1 | cds-NP_013695.2_VR1 | 98.9 | 99.4 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:198245-200390:+ | gene-YML017W_ZTW1 | rna-NM_001182375.1_ZTW1 | cds-NP_013695.2_ZTW1 | 99.3 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:229937-232082:+ | gene-YML017W_Sparadoxus | rna-NM_001182375.1_Sparadoxus | cds-NP_013695.2_Sparadoxus | 88.1 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |