Gene name: PSO2
Reference locus (S288C): YMR137C
Gene biotype: protein_coding
Description: DNA cross-link repair protein PSO2/SNM1; Nuclease required for DNA single- and double-strand break repair; acts at a post-incision step in repair of breaks that result from interstrand cross-links produced by a variety of mono- and bi-functional psoralen derivatives; induced by UV-irradiation; forms nuclear foci upon DNA replication stress; Belongs to the DNA repair metallo-beta-lactamase (DRMBL) family
Top 10 interactors (score): DNL4 (0.987); REV3 (0.975); YKU70 (0.956); YKU80 (0.941); MRE11 (0.941); EXO1 (0.936); RAD2 (0.912); MUS81 (0.908); MSH2 (0.9); RAD51 (0.894); RAD14 (0.887); RAD52 (0.88); PFA4 (0.861); RAD1 (0.85); RAD27 (0.849); POL4 (0.847); MPH1 (0.823); RAD9 (0.816); RAD6 (0.813); HRQ1 (0.813)
Homologues (species, bitscore): DCLRE1A (Homo sapiens, 176.8); Dclre1a (Mus musculus, 181.8); dclre1a (Danio rerio, 175.6); dclre1b (Xenopus tropicalis, 99.0); Snm1 (Drosophila melanogaster, 134.8); mrt-1 (Caenorhabditis elegans, 76.3); AT2G45700 (Arabidopsis thaliana, 167.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:582471-584456:- | gene-YMR137C_AKU4011 | rna-NM_001182639.1_AKU4011 | cds-NP_013857.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000068.1:88071-90056:+ | gene-YMR137C_BG1 | rna-NM_001182639.1_BG1 | cds-NP_013857.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:525658-527643:- | gene-YMR137C_Bruggeman | rna-NM_001182639.1_Bruggeman | cds-NP_013857.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:527873-529858:- | gene-YMR137C_CAT1 | rna-NM_001182639.1_CAT1 | cds-NP_013857.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:515395-517380:- | gene-YMR137C_CBS1585 | rna-NM_001182639.1_CBS1585 | cds-NP_013857.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:519288-521273:- | gene-YMR137C_CBS436 | rna-NM_001182639.1_CBS436 | cds-NP_013857.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:628388-630373:- | gene-YMR137C_CBS6412 | rna-NM_001182639.1_CBS6412 | cds-NP_013857.1_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:513955-515940:- | gene-YMR137C_CBS6413 | rna-NM_001182639.1_CBS6413 | cds-NP_013857.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:537491-539476:- | gene-YMR137C_CENPK1137D | rna-NM_001182639.1_CENPK1137D | cds-NP_013857.1_CENPK1137D | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:513584-515569:- | gene-YMR137C_EthanolRed | rna-NM_001182639.1_EthanolRed | cds-NP_013857.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:520582-522567:- | gene-YMR137C_FaliES1 | rna-NM_001182639.1_FaliES1 | cds-NP_013857.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000294.1:5474-7459:+ | gene-YMR137C_JAY291 | rna-NM_001182639.1_JAY291 | cds-NP_013857.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:520383-522368:- | gene-YMR137C_MUCL30387 | rna-NM_001182639.1_MUCL30387 | cds-NP_013857.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:525911-527896:- | gene-YMR137C_MUCL30388 | rna-NM_001182639.1_MUCL30388 | cds-NP_013857.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:516096-518081:- | gene-YMR137C_MUCL39482 | rna-NM_001182639.1_MUCL39482 | cds-NP_013857.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:522394-524379:- | gene-YMR137C_MUCL42920 | rna-NM_001182639.1_MUCL42920 | cds-NP_013857.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:542932-544917:- | gene-YMR137C_NCIM3186 | rna-NM_001182639.1_NCIM3186 | cds-NP_013857.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:515734-517719:- | gene-YMR137C_NCYC1407 | rna-NM_001182639.1_NCYC1407 | cds-NP_013857.1_NCYC1407 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:526175-528160:- | gene-YMR137C_PE2H3 | rna-NM_001182639.1_PE2H3 | cds-NP_013857.1_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:526630-528615:- | gene-YMR137C_PE2H4 | rna-NM_001182639.1_PE2H4 | cds-NP_013857.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:542978-544963:- | gene-YMR137C_S288C | rna-NM_001182639.1_S288C | cds-NP_013857.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000048.1:26306-28291:+ | gene-YMR137C_SA1 | rna-NM_001182639.1_SA1 | cds-NP_013857.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:515981-517966:- | gene-YMR137C_ThermosaccDry | rna-NM_001182639.1_ThermosaccDry | cds-NP_013857.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:528684-530669:- | gene-YMR137C_VR1 | rna-NM_001182639.1_VR1 | cds-NP_013857.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:491125-493110:- | gene-YMR137C_ZTW1 | rna-NM_001182639.1_ZTW1 | cds-NP_013857.1_ZTW1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:527410-529404:- | gene-YMR137C_Sparadoxus | rna-NM_001182639.1_Sparadoxus | cds-NP_013857.1_Sparadoxus | 87.5 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |