Gene name: PSH1
Reference locus (S288C): YOL054W
Gene biotype: protein_coding
Description: RING finger protein PSH1; E3 ubiquitin ligase targeting centromere-binding protein Cse4p; mediates polyubiquitination and degradation of histone H3 variant Cse4p, preventing its mislocalization to euchromatin independent of Slx5p; ubiquitination of Cse4p may be antagonized by Scm3p
Top 10 interactors (score): CSE4 (0.995); SPT16 (0.959); HHT2 (0.938); SCM3 (0.934); HHF1 (0.93); HHT1 (0.927); POB3 (0.92); DSN1 (0.915); CKA2 (0.855); HTA2 (0.84); FPR3 (0.831); SLX5 (0.827); HTB1 (0.812); TOM1 (0.776); UBC1 (0.768); HTA1 (0.754); HSM3 (0.747); UBC8 (0.739); UBR2 (0.716); HTB2 (0.71)
Homologues (species, bitscore): TRIM25 (Homo sapiens, 55.1); Trim25 (Mus musculus, 52.4); ftr97 (Danio rerio, 63.9); LOC100496318 (Xenopus tropicalis, 59.7); CG13605 (Drosophila melanogaster, 53.1); nhl-1 (Caenorhabditis elegans, 51.2); VIM1 (Arabidopsis thaliana, 53.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:212911-214131:+ | gene-YOL054W_AKU4011 | rna-NM_001183309.1_AKU4011 | cds-NP_014587.1_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000152.1:28572-29792:+ | gene-YOL054W_BG1 | rna-NM_001183309.1_BG1 | cds-NP_014587.1_BG1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:215802-217022:+ | gene-YOL054W_Bruggeman | rna-NM_001183309.1_Bruggeman | cds-NP_014587.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:213741-214961:+ | gene-YOL054W_CAT1 | rna-NM_001183309.1_CAT1 | cds-NP_014587.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:207578-208798:+ | gene-YOL054W_CBS1585 | rna-NM_001183309.1_CBS1585 | cds-NP_014587.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:211894-213114:+ | gene-YOL054W_CBS436 | rna-NM_001183309.1_CBS436 | cds-NP_014587.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:206975-208195:+ | gene-YOL054W_CBS6412 | rna-NM_001183309.1_CBS6412 | cds-NP_014587.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:214478-215698:+ | gene-YOL054W_CBS6413 | rna-NM_001183309.1_CBS6413 | cds-NP_014587.1_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:228316-229536:+ | gene-YOL054W_CENPK1137D | rna-NM_001183309.1_CENPK1137D | cds-NP_014587.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:209933-211153:+ | gene-YOL054W_EthanolRed | rna-NM_001183309.1_EthanolRed | cds-NP_014587.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:212850-214070:+ | gene-YOL054W_FaliES1 | rna-NM_001183309.1_FaliES1 | cds-NP_014587.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000018.1:52387-53607:- | gene-YOL054W_JAY291 | rna-NM_001183309.1_JAY291 | cds-NP_014587.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:218574-219794:+ | gene-YOL054W_MUCL30387 | rna-NM_001183309.1_MUCL30387 | cds-NP_014587.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:223172-224392:+ | gene-YOL054W_MUCL30388 | rna-NM_001183309.1_MUCL30388 | cds-NP_014587.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:215096-216316:+ | gene-YOL054W_MUCL39482 | rna-NM_001183309.1_MUCL39482 | cds-NP_014587.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:230077-231297:+ | gene-YOL054W_MUCL42920 | rna-NM_001183309.1_MUCL42920 | cds-NP_014587.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:228503-229723:+ | gene-YOL054W_NCIM3186 | rna-NM_001183309.1_NCIM3186 | cds-NP_014587.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:221840-223060:+ | gene-YOL054W_NCYC1407 | rna-NM_001183309.1_NCYC1407 | cds-NP_014587.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:204261-205481:+ | gene-YOL054W_PE2H3 | rna-NM_001183309.1_PE2H3 | cds-NP_014587.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:215235-216455:+ | gene-YOL054W_PE2H4 | rna-NM_001183309.1_PE2H4 | cds-NP_014587.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:228614-229834:+ | gene-YOL054W_S288C | rna-NM_001183309.1_S288C | cds-NP_014587.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:196585-197805:+ | gene-YOL054W_SA1 | rna-NM_001183309.1_SA1 | cds-NP_014587.1_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:211419-212639:+ | gene-YOL054W_ThermosaccDry | rna-NM_001183309.1_ThermosaccDry | cds-NP_014587.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:211489-212709:+ | gene-YOL054W_VR1 | rna-NM_001183309.1_VR1 | cds-NP_014587.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:211297-212517:+ | gene-YOL054W_ZTW1 | rna-NM_001183309.1_ZTW1 | cds-NP_014587.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:219641-220864:+ | gene-YOL054W_Sparadoxus | rna-NM_001183309.1_Sparadoxus | cds-NP_014587.1_Sparadoxus | 88.7 | 99.5 | Verified | 1 | 1 | 1 | False | True | False | False | False |