Gene name: PSF3
Reference locus (S288C): YOL146W
Gene biotype: protein_coding
Description: Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery
Top 10 interactors (score): MCM4 (0.999); CSM3 (0.999); SLD5 (0.999); CDC6 (0.999); CDC45 (0.999); MCM2 (0.999); MCM6 (0.999); MCM7 (0.999); MCM5 (0.999); TOF1 (0.999); PSF1 (0.999); MCM3 (0.999); PSF2 (0.999); CTF4 (0.999); MCM10 (0.998); DPB2 (0.998); DPB11 (0.996); ORC4 (0.984); SLD2 (0.981); SLD3 (0.976)
Homologues (species, bitscore): Gins3 (Mus musculus, 58.9); gins3 (Danio rerio, 58.2); gins3 (Xenopus tropicalis, 55.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:37513-38097:+ | gene-YOL146W_AKU4011 | rna-NM_001183400.1_AKU4011 | cds-NP_014495.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000172.1:3148-3732:+ | gene-YOL146W_BG1 | rna-NM_001183400.1_BG1 | cds-NP_014495.2_BG1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:38815-39399:+ | gene-YOL146W_Bruggeman | rna-NM_001183400.1_Bruggeman | cds-NP_014495.2_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:37512-38096:+ | gene-YOL146W_CAT1 | rna-NM_001183400.1_CAT1 | cds-NP_014495.2_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:31980-32564:+ | gene-YOL146W_CBS1585 | rna-NM_001183400.1_CBS1585 | cds-NP_014495.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:37838-38422:+ | gene-YOL146W_CBS436 | rna-NM_001183400.1_CBS436 | cds-NP_014495.2_CBS436 | 98.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005341.1:31882-32466:+ | gene-YOL146W_CBS6412 | rna-NM_001183400.1_CBS6412 | cds-NP_014495.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:38328-38912:+ | gene-YOL146W_CBS6413 | rna-NM_001183400.1_CBS6413 | cds-NP_014495.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:48762-49346:+ | gene-YOL146W_CENPK1137D | rna-NM_001183400.1_CENPK1137D | cds-NP_014495.2_CENPK1137D | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005485.1:35793-36377:+ | gene-YOL146W_EthanolRed | rna-NM_001183400.1_EthanolRed | cds-NP_014495.2_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:37816-38400:+ | gene-YOL146W_FaliES1 | rna-NM_001183400.1_FaliES1 | cds-NP_014495.2_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000329.1:44168-44752:- | gene-YOL146W_JAY291 | rna-NM_001183400.1_JAY291 | cds-NP_014495.2_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:43436-44020:+ | gene-YOL146W_MUCL30387 | rna-NM_001183400.1_MUCL30387 | cds-NP_014495.2_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:46446-47030:+ | gene-YOL146W_MUCL30388 | rna-NM_001183400.1_MUCL30388 | cds-NP_014495.2_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:39910-40494:+ | gene-YOL146W_MUCL39482 | rna-NM_001183400.1_MUCL39482 | cds-NP_014495.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:55841-56425:+ | gene-YOL146W_MUCL42920 | rna-NM_001183400.1_MUCL42920 | cds-NP_014495.2_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:48753-49337:+ | gene-YOL146W_NCIM3186 | rna-NM_001183400.1_NCIM3186 | cds-NP_014495.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:45991-46575:+ | gene-YOL146W_NCYC1407 | rna-NM_001183400.1_NCYC1407 | cds-NP_014495.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:24387-24971:+ | gene-YOL146W_PE2H3 | rna-NM_001183400.1_PE2H3 | cds-NP_014495.2_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:41335-41919:+ | gene-YOL146W_PE2H4 | rna-NM_001183400.1_PE2H4 | cds-NP_014495.2_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:48864-49448:+ | gene-YOL146W_S288C | rna-NM_001183400.1_S288C | cds-NP_014495.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000001.1:22246-22830:+ | gene-YOL146W_SA1 | rna-NM_001183400.1_SA1 | cds-NP_014495.2_SA1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:36959-37543:+ | gene-YOL146W_ThermosaccDry | rna-NM_001183400.1_ThermosaccDry | cds-NP_014495.2_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:37609-38193:+ | gene-YOL146W_VR1 | rna-NM_001183400.1_VR1 | cds-NP_014495.2_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000031.1:36715-37299:+ | gene-YOL146W_ZTW1 | rna-NM_001183400.1_ZTW1 | cds-NP_014495.2_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:39237-39815:+ | gene-YOL146W_Sparadoxus | rna-NM_001183400.1_Sparadoxus | cds-NP_014495.2_Sparadoxus | 90.7 | 98.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |