Gene name: PSF2
Reference locus (S288C): YJL072C
Gene biotype: protein_coding
Description: Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery; Belongs to the GINS2/PSF2 family
Top 10 interactors (score): MCM4 (0.999); SLD5 (0.999); CTF4 (0.999); MCM3 (0.999); DPB2 (0.999); MCM5 (0.999); PSF3 (0.999); PSF1 (0.999); MCM7 (0.999); MCM6 (0.999); MCM2 (0.999); CDC45 (0.999); CDC6 (0.997); MCM10 (0.997); TOF1 (0.995); DPB11 (0.993); CSM3 (0.993); SLD3 (0.98); ORC1 (0.978); POL12 (0.97)
Homologues (species, bitscore): GINS2 (Homo sapiens, 68.6); Gins2 (Mus musculus, 63.5); gins2 (Danio rerio, 79.0); gins2 (Xenopus tropicalis, 73.9); Psf2 (Drosophila melanogaster, 67.0); F31C3.5 (Caenorhabditis elegans, 68.2); PSF2 (Arabidopsis thaliana, 95.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:288088-288729:- | gene-YJL072C_AKU4011 | rna-NM_001181505.1_AKU4011 | cds-NP_012463.1_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000190.1:325783-326424:+ | gene-YJL072C_BG1 | rna-NM_001181505.1_BG1 | cds-NP_012463.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:300627-301268:- | gene-YJL072C_Bruggeman | rna-NM_001181505.1_Bruggeman | cds-NP_012463.1_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:304727-305368:- | gene-YJL072C_CAT1 | rna-NM_001181505.1_CAT1 | cds-NP_012463.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:299746-300387:- | gene-YJL072C_CBS1585 | rna-NM_001181505.1_CBS1585 | cds-NP_012463.1_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:317753-318394:- | gene-YJL072C_CBS436 | rna-NM_001181505.1_CBS436 | cds-NP_012463.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:288846-289487:- | gene-YJL072C_CBS6412 | rna-NM_001181505.1_CBS6412 | cds-NP_012463.1_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:290202-290843:- | gene-YJL072C_CBS6413 | rna-NM_001181505.1_CBS6413 | cds-NP_012463.1_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:287691-288332:- | gene-YJL072C_CENPK1137D | rna-NM_001181505.1_CENPK1137D | cds-NP_012463.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:291926-292567:- | gene-YJL072C_EthanolRed | rna-NM_001181505.1_EthanolRed | cds-NP_012463.1_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:303501-304142:- | gene-YJL072C_FaliES1 | rna-NM_001181505.1_FaliES1 | cds-NP_012463.1_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000138.1:101085-101726:- | gene-YJL072C_JAY291 | rna-NM_001181505.1_JAY291 | cds-NP_012463.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:301784-302425:- | gene-YJL072C_MUCL30387 | rna-NM_001181505.1_MUCL30387 | cds-NP_012463.1_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:297820-298461:- | gene-YJL072C_MUCL30388 | rna-NM_001181505.1_MUCL30388 | cds-NP_012463.1_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:292498-293139:- | gene-YJL072C_MUCL39482 | rna-NM_001181505.1_MUCL39482 | cds-NP_012463.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:299148-299789:- | gene-YJL072C_MUCL42920 | rna-NM_001181505.1_MUCL42920 | cds-NP_012463.1_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:305200-305841:- | gene-YJL072C_NCIM3186 | rna-NM_001181505.1_NCIM3186 | cds-NP_012463.1_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:291194-291835:- | gene-YJL072C_NCYC1407 | rna-NM_001181505.1_NCYC1407 | cds-NP_012463.1_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:303548-304189:- | gene-YJL072C_PE2H3 | rna-NM_001181505.1_PE2H3 | cds-NP_012463.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:303192-303833:- | gene-YJL072C_PE2H4 | rna-NM_001181505.1_PE2H4 | cds-NP_012463.1_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:305221-305862:- | gene-YJL072C_S288C | rna-NM_001181505.1_S288C | cds-NP_012463.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000003.1:101110-101751:- | gene-YJL072C_SA1 | rna-NM_001181505.1_SA1 | cds-NP_012463.1_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:296914-297555:- | gene-YJL072C_ThermosaccDry | rna-NM_001181505.1_ThermosaccDry | cds-NP_012463.1_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:299091-299732:- | gene-YJL072C_VR1 | rna-NM_001181505.1_VR1 | cds-NP_012463.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:278300-278941:- | gene-YJL072C_ZTW1 | rna-NM_001181505.1_ZTW1 | cds-NP_012463.1_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:302323-302964:- | gene-YJL072C_Sparadoxus | rna-NM_001181505.1_Sparadoxus | cds-NP_012463.1_Sparadoxus | 92.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |