Gene name: PSF1
Reference locus (S288C): YDR013W
Gene biotype: protein_coding
Description: Subunit of the GINS complex (Sld5p, Psf1p, Psf2p, Psf3p); complex is localized to DNA replication origins and implicated in assembly of the DNA replication machinery
Top 10 interactors (score): MCM7 (0.999); MCM4 (0.999); CSM3 (0.999); SLD5 (0.999); CTF4 (0.999); PSF3 (0.999); MCM5 (0.999); MCM3 (0.999); PSF2 (0.999); DPB2 (0.999); CDC45 (0.999); MCM2 (0.999); MCM6 (0.999); DPB11 (0.997); CDC6 (0.997); POL2 (0.996); MCM10 (0.996); SLD3 (0.993); TOF1 (0.989); ORC5 (0.987)
Homologues (species, bitscore): GINS1 (Homo sapiens, 69.3); Gins1 (Mus musculus, 69.3); gins1 (Danio rerio, 70.5); gins1 (Xenopus tropicalis, 71.2); Psf1 (Drosophila melanogaster, 65.9); R53.6 (Caenorhabditis elegans, 67.8); PSF1 (Arabidopsis thaliana, 64.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:459029-459655:+ | gene-YDR013W_AKU4011 | rna-NM_001180321.3_AKU4011 | cds-NP_010296.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:90091-90717:- | gene-YDR013W_BG1 | rna-NM_001180321.3_BG1 | cds-NP_010296.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:487329-487955:+ | gene-YDR013W_Bruggeman | rna-NM_001180321.3_Bruggeman | cds-NP_010296.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:472383-473009:+ | gene-YDR013W_CAT1 | rna-NM_001180321.3_CAT1 | cds-NP_010296.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:455620-456246:+ | gene-YDR013W_CBS1585 | rna-NM_001180321.3_CBS1585 | cds-NP_010296.3_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:472660-473286:+ | gene-YDR013W_CBS436 | rna-NM_001180321.3_CBS436 | cds-NP_010296.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:452530-453156:+ | gene-YDR013W_CBS6412 | rna-NM_001180321.3_CBS6412 | cds-NP_010296.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:474809-475435:+ | gene-YDR013W_CBS6413 | rna-NM_001180321.3_CBS6413 | cds-NP_010296.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:472123-472749:+ | gene-YDR013W_CENPK1137D | rna-NM_001180321.3_CENPK1137D | cds-NP_010296.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:467051-467677:+ | gene-YDR013W_EthanolRed | rna-NM_001180321.3_EthanolRed | cds-NP_010296.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:473410-474036:+ | gene-YDR013W_FaliES1 | rna-NM_001180321.3_FaliES1 | cds-NP_010296.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000042.1:39513-40139:- | gene-YDR013W_JAY291 | rna-NM_001180321.3_JAY291 | cds-NP_010296.3_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:472909-473535:+ | gene-YDR013W_MUCL30387 | rna-NM_001180321.3_MUCL30387 | cds-NP_010296.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:463371-463997:+ | gene-YDR013W_MUCL30388 | rna-NM_001180321.3_MUCL30388 | cds-NP_010296.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:456989-457615:+ | gene-YDR013W_MUCL39482 | rna-NM_001180321.3_MUCL39482 | cds-NP_010296.3_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:378694-379320:+ | gene-YDR013W_MUCL42920 | rna-NM_001180321.3_MUCL42920 | cds-NP_010296.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:473080-473706:+ | gene-YDR013W_NCIM3186 | rna-NM_001180321.3_NCIM3186 | cds-NP_010296.3_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:456438-457064:+ | gene-YDR013W_NCYC1407 | rna-NM_001180321.3_NCYC1407 | cds-NP_010296.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:471552-472178:+ | gene-YDR013W_PE2H3 | rna-NM_001180321.3_PE2H3 | cds-NP_010296.3_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:470857-471483:+ | gene-YDR013W_PE2H4 | rna-NM_001180321.3_PE2H4 | cds-NP_010296.3_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:473157-473783:+ | gene-YDR013W_S288C | rna-NM_001180321.3_S288C | cds-NP_010296.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000065.1:331-957:+ | gene-YDR013W_SA1 | rna-NM_001180321.3_SA1 | cds-NP_010296.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:472889-473515:+ | gene-YDR013W_ThermosaccDry | rna-NM_001180321.3_ThermosaccDry | cds-NP_010296.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:477503-478129:+ | gene-YDR013W_VR1 | rna-NM_001180321.3_VR1 | cds-NP_010296.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:470784-471410:+ | gene-YDR013W_ZTW1 | rna-NM_001180321.3_ZTW1 | cds-NP_010296.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:474963-475589:+ | gene-YDR013W_Sparadoxus | rna-NM_001180321.3_Sparadoxus | cds-NP_010296.3_Sparadoxus | 92.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |