Gene name: PSD1
Reference locus (S288C): YNL169C
Gene biotype: protein_coding
Description: Phosphatidylserine decarboxylase of the mitochondrial inner membrane; converts phosphatidylserine to phosphatidylethanolamine; regulates mitochondrial fusion and morphology by affecting lipid mixing in the mitochondrial membrane and by influencing the ratio of long to short forms of Mgm1p; partly exposed to the mitochondrial intermembrane space; autocatalytically processed; Belongs to the phosphatidylserine decarboxylase family. PSD-B subfamily. Eukaryotic type I sub-subfamily
Top 10 interactors (score): OPI3 (0.998); CHO1 (0.996); CHO2 (0.994); ALE1 (0.992); PSD2 (0.99); EPT1 (0.987); SPO14 (0.982); CRD1 (0.979); OXA1 (0.976); ECT1 (0.975); PGS1 (0.968); TGL5 (0.957); TGL4 (0.954); CDS1 (0.944); PIS1 (0.939); PCT1 (0.935); EKI1 (0.925); ITR1 (0.885); FMP30 (0.879); CPT1 (0.875)
Homologues (species, bitscore): PISD (Homo sapiens, 249.2); Gm20671 (Mus musculus, 250.8); pisd (Danio rerio, 245.7); MGC147577 (Xenopus tropicalis, 239.2); CG5991 (Drosophila melanogaster, 223.4); psd-1 (Caenorhabditis elegans, 191.4); PSD1 (Arabidopsis thaliana, 218.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:309891-311396:- | gene-YNL169C_AKU4011 | rna-NM_001183007.1_AKU4011 | cds-NP_014230.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:213860-215362:- | gene-YNL169C_BG1 | rna-NM_001183007.1_BG1 | cds-NP_014230.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:319952-321454:- | gene-YNL169C_Bruggeman | rna-NM_001183007.1_Bruggeman | cds-NP_014230.1_Bruggeman | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:362829-364331:- | gene-YNL169C_CAT1 | rna-NM_001183007.1_CAT1 | cds-NP_014230.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:310543-312048:- | gene-YNL169C_CBS1585 | rna-NM_001183007.1_CBS1585 | cds-NP_014230.1_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:378867-380369:- | gene-YNL169C_CBS436 | rna-NM_001183007.1_CBS436 | cds-NP_014230.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:305948-307453:- | gene-YNL169C_CBS6412 | rna-NM_001183007.1_CBS6412 | cds-NP_014230.1_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:306976-308481:- | gene-YNL169C_CBS6413 | rna-NM_001183007.1_CBS6413 | cds-NP_014230.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:309982-311484:- | gene-YNL169C_CENPK1137D | rna-NM_001183007.1_CENPK1137D | cds-NP_014230.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:306864-308369:- | gene-YNL169C_EthanolRed | rna-NM_001183007.1_EthanolRed | cds-NP_014230.1_EthanolRed | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:302777-304282:- | gene-YNL169C_FaliES1 | rna-NM_001183007.1_FaliES1 | cds-NP_014230.1_FaliES1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000260.1:14216-15718:+ | gene-YNL169C_JAY291 | rna-NM_001183007.1_JAY291 | cds-NP_014230.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:315767-317272:- | gene-YNL169C_MUCL30387 | rna-NM_001183007.1_MUCL30387 | cds-NP_014230.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:350321-351826:- | gene-YNL169C_MUCL30388 | rna-NM_001183007.1_MUCL30388 | cds-NP_014230.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:307782-309287:- | gene-YNL169C_MUCL39482 | rna-NM_001183007.1_MUCL39482 | cds-NP_014230.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:310188-311693:- | gene-YNL169C_MUCL42920 | rna-NM_001183007.1_MUCL42920 | cds-NP_014230.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:316138-317640:- | gene-YNL169C_NCIM3186 | rna-NM_001183007.1_NCIM3186 | cds-NP_014230.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:309876-311381:- | gene-YNL169C_NCYC1407 | rna-NM_001183007.1_NCYC1407 | cds-NP_014230.1_NCYC1407 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:306841-308343:- | gene-YNL169C_PE2H3 | rna-NM_001183007.1_PE2H3 | cds-NP_014230.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:306229-307731:- | gene-YNL169C_PE2H4 | rna-NM_001183007.1_PE2H4 | cds-NP_014230.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:316169-317671:- | gene-YNL169C_S288C | rna-NM_001183007.1_S288C | cds-NP_014230.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000018.1:95905-97407:+ | gene-YNL169C_SA1 | rna-NM_001183007.1_SA1 | cds-NP_014230.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:303634-305139:- | gene-YNL169C_ThermosaccDry | rna-NM_001183007.1_ThermosaccDry | cds-NP_014230.1_ThermosaccDry | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:322161-323663:- | gene-YNL169C_VR1 | rna-NM_001183007.1_VR1 | cds-NP_014230.1_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:213459-214961:- | gene-YNL169C_ZTW1 | rna-NM_001183007.1_ZTW1 | cds-NP_014230.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:314225-315730:- | gene-YNL169C_Sparadoxus | rna-NM_001183007.1_Sparadoxus | cds-NP_014230.1_Sparadoxus | 91.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |