Gene name: PSA1
Reference locus (S288C): YDL055C
Gene biotype: protein_coding
Description: GDP-mannose pyrophosphorylase (mannose-1-phosphate guanyltransferase); synthesizes GDP-mannose from GTP and mannose-1-phosphate in cell wall biosynthesis; required for normal cell wall structure
Top 10 interactors (score): SEC53 (0.998); DPM1 (0.996); ALG1 (0.991); PMI40 (0.974); GCD2 (0.907); ALG2 (0.882); PGI1 (0.88); SUI2 (0.859); URA7 (0.859); SWD2 (0.85); GCD7 (0.844); PMT4 (0.824); GLT1 (0.795); SEC59 (0.779); CWH41 (0.774); ASN1 (0.768); PCM1 (0.754); YHL012W (0.748); YEF3 (0.747); MNS1 (0.744)
Homologues (species, bitscore): GMPPB (Homo sapiens, 440.7); Gmppb (Mus musculus, 451.4); gmppb (Danio rerio, 451.8); gmppb (Xenopus tropicalis, 459.9); CG1129 (Drosophila melanogaster, 469.2); tag-335 (Caenorhabditis elegans, 426.0); CYT1 (Arabidopsis thaliana, 451.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:340242-341327:- | gene-YDL055C_AKU4011 | rna-NM_001180114.1_AKU4011 | cds-NP_010228.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:208690-209775:+ | gene-YDL055C_BG1 | rna-NM_001180114.1_BG1 | cds-NP_010228.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:358059-359144:- | gene-YDL055C_Bruggeman | rna-NM_001180114.1_Bruggeman | cds-NP_010228.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:354412-355497:- | gene-YDL055C_CAT1 | rna-NM_001180114.1_CAT1 | cds-NP_010228.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:338520-339605:- | gene-YDL055C_CBS1585 | rna-NM_001180114.1_CBS1585 | cds-NP_010228.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:355226-356311:- | gene-YDL055C_CBS436 | rna-NM_001180114.1_CBS436 | cds-NP_010228.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:336590-337675:- | gene-YDL055C_CBS6412 | rna-NM_001180114.1_CBS6412 | cds-NP_010228.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:356614-357699:- | gene-YDL055C_CBS6413 | rna-NM_001180114.1_CBS6413 | cds-NP_010228.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:354491-355576:- | gene-YDL055C_CENPK1137D | rna-NM_001180114.1_CENPK1137D | cds-NP_010228.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:351072-352157:- | gene-YDL055C_EthanolRed | rna-NM_001180114.1_EthanolRed | cds-NP_010228.1_EthanolRed | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:357319-358404:- | gene-YDL055C_FaliES1 | rna-NM_001180114.1_FaliES1 | cds-NP_010228.1_FaliES1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000240.1:11671-12756:- | gene-YDL055C_JAY291 | rna-NM_001180114.1_JAY291 | cds-NP_010228.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:355450-356535:- | gene-YDL055C_MUCL30387 | rna-NM_001180114.1_MUCL30387 | cds-NP_010228.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:346576-347661:- | gene-YDL055C_MUCL30388 | rna-NM_001180114.1_MUCL30388 | cds-NP_010228.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:339640-340725:- | gene-YDL055C_MUCL39482 | rna-NM_001180114.1_MUCL39482 | cds-NP_010228.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:261646-262731:- | gene-YDL055C_MUCL42920 | rna-NM_001180114.1_MUCL42920 | cds-NP_010228.1_MUCL42920 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:355597-356682:- | gene-YDL055C_NCIM3186 | rna-NM_001180114.1_NCIM3186 | cds-NP_010228.1_NCIM3186 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:339628-340713:- | gene-YDL055C_NCYC1407 | rna-NM_001180114.1_NCYC1407 | cds-NP_010228.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:346456-347541:- | gene-YDL055C_PE2H3 | rna-NM_001180114.1_PE2H3 | cds-NP_010228.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:346456-347541:- | gene-YDL055C_PE2H4 | rna-NM_001180114.1_PE2H4 | cds-NP_010228.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:355674-356759:- | gene-YDL055C_S288C | rna-NM_001180114.1_S288C | cds-NP_010228.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:78175-79260:+ | gene-YDL055C_SA1 | rna-NM_001180114.1_SA1 | cds-NP_010228.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:356771-357856:- | gene-YDL055C_ThermosaccDry | rna-NM_001180114.1_ThermosaccDry | cds-NP_010228.1_ThermosaccDry | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:359345-360430:- | gene-YDL055C_VR1 | rna-NM_001180114.1_VR1 | cds-NP_010228.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:354705-355790:- | gene-YDL055C_ZTW1 | rna-NM_001180114.1_ZTW1 | cds-NP_010228.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:356927-358012:- | gene-YDL055C_Sparadoxus | rna-NM_001180114.1_Sparadoxus | cds-NP_010228.1_Sparadoxus | 95.1 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |