Gene name: PRT1
Reference locus (S288C): YOR361C
Gene biotype: protein_coding
Description: eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes; eIF3 is also involved in programmed stop codon readthrough
Top 10 interactors (score): SUI1 (0.999); TIF35 (0.999); SUI3 (0.999); CDC33 (0.999); RPG1 (0.999); NIP1 (0.999); GCD11 (0.999); TIF5 (0.999); YGR054W (0.999); RLI1 (0.999); SUI2 (0.999); TIF34 (0.999); FUN12 (0.999); HCR1 (0.999); RPS6B (0.998); RPS3 (0.998); RPS2 (0.998); RPS13 (0.998); ASC1 (0.998); TIF11 (0.998)
Homologues (species, bitscore): EIF3B (Homo sapiens, 349.7); Eif3b (Mus musculus, 352.4); eif3ba (Danio rerio, 325.9); eif3b (Xenopus tropicalis, 353.6); eIF3-S9 (Drosophila melanogaster, 329.7); eif-3.B (Caenorhabditis elegans, 207.6); EIF3B-2 (Arabidopsis thaliana, 309.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005309.1:1001942-1004239:- | gene-YOR361C_AKU4011 | rna-NM_001183781.3_AKU4011 | cds-NP_015006.3_AKU4011 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000078.1:39117-41414:- | gene-YOR361C_BG1 | rna-NM_001183781.3_BG1 | cds-NP_015006.3_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005517.1:986761-989058:- | gene-YOR361C_Bruggeman | rna-NM_001183781.3_Bruggeman | cds-NP_015006.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005533.1:986589-988886:- | gene-YOR361C_CAT1 | rna-NM_001183781.3_CAT1 | cds-NP_015006.3_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005373.1:986352-988649:- | gene-YOR361C_CBS1585 | rna-NM_001183781.3_CBS1585 | cds-NP_015006.3_CBS1585 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005357.1:981172-983469:- | gene-YOR361C_CBS436 | rna-NM_001183781.3_CBS436 | cds-NP_015006.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:215649-217946:- | gene-YOR361C_CBS6412 | rna-NM_001183781.3_CBS6412 | cds-NP_015006.3_CBS6412 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005325.1:990625-992922:- | gene-YOR361C_CBS6413 | rna-NM_001183781.3_CBS6413 | cds-NP_015006.3_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001536.1:1015183-1017474:- | gene-YOR361C_CENPK1137D | rna-NM_001183781.3_CENPK1137D | cds-NP_015006.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:230651-232948:- | gene-YOR361C_EthanolRed | rna-NM_001183781.3_EthanolRed | cds-NP_015006.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005549.1:983480-985777:- | gene-YOR361C_FaliES1 | rna-NM_001183781.3_FaliES1 | cds-NP_015006.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000078.1:19898-22195:+ | gene-YOR361C_JAY291 | rna-NM_001183781.3_JAY291 | cds-NP_015006.3_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005421.1:996087-998384:- | gene-YOR361C_MUCL30387 | rna-NM_001183781.3_MUCL30387 | cds-NP_015006.3_MUCL30387 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005453.1:1004114-1006411:- | gene-YOR361C_MUCL30388 | rna-NM_001183781.3_MUCL30388 | cds-NP_015006.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005293.1:992887-995184:- | gene-YOR361C_MUCL39482 | rna-NM_001183781.3_MUCL39482 | cds-NP_015006.3_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005437.1:1000493-1002790:- | gene-YOR361C_MUCL42920 | rna-NM_001183781.3_MUCL42920 | cds-NP_015006.3_MUCL42920 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011824.1:1015250-1017541:- | gene-YOR361C_NCIM3186 | rna-NM_001183781.3_NCIM3186 | cds-NP_015006.3_NCIM3186 | 95.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005277.1:993895-996192:- | gene-YOR361C_NCYC1407 | rna-NM_001183781.3_NCYC1407 | cds-NP_015006.3_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994154.1:989154-991451:- | gene-YOR361C_PE2H3 | rna-NM_001183781.3_PE2H3 | cds-NP_015006.3_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999886.1:1005505-1007802:- | gene-YOR361C_PE2H4 | rna-NM_001183781.3_PE2H4 | cds-NP_015006.3_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001147.6:1015361-1017652:- | gene-YOR361C_S288C | rna-NM_001183781.3_S288C | cds-NP_015006.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000016.1:119888-122185:- | gene-YOR361C_SA1 | rna-NM_001183781.3_SA1 | cds-NP_015006.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005501.1:982650-984947:- | gene-YOR361C_ThermosaccDry | rna-NM_001183781.3_ThermosaccDry | cds-NP_015006.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005469.1:1043907-1046204:- | gene-YOR361C_VR1 | rna-NM_001183781.3_VR1 | cds-NP_015006.3_VR1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000032.1:715380-717677:- | gene-YOR361C_ZTW1 | rna-NM_001183781.3_ZTW1 | cds-NP_015006.3_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047501.1:988840-991130:- | gene-YOR361C_Sparadoxus | rna-NM_001183781.3_Sparadoxus | cds-NP_015006.3_Sparadoxus | 90.4 | 99.4 | Unannotated | 1 | 1 | 0 | False | False | True | False | False |