PRT1 (YOR361C)


Gene profile

Gene name: PRT1
Reference locus (S288C): YOR361C
Gene biotype: protein_coding

Description: eIF3b subunit of the eukaryotic translation initiation factor 3 (eIF3); subunit of the core complex of eIF3; essential for translation; part of a subcomplex (Prt1p-Rpg1p-Nip1p) that stimulates binding of mRNA and tRNA(i)Met to ribosomes; eIF3 is also involved in programmed stop codon readthrough

Top 10 interactors (score): SUI1 (0.999); TIF35 (0.999); SUI3 (0.999); CDC33 (0.999); RPG1 (0.999); NIP1 (0.999); GCD11 (0.999); TIF5 (0.999); YGR054W (0.999); RLI1 (0.999); SUI2 (0.999); TIF34 (0.999); FUN12 (0.999); HCR1 (0.999); RPS6B (0.998); RPS3 (0.998); RPS2 (0.998); RPS13 (0.998); ASC1 (0.998); TIF11 (0.998)

Homologues (species, bitscore): EIF3B (Homo sapiens, 349.7); Eif3b (Mus musculus, 352.4); eif3ba (Danio rerio, 325.9); eif3b (Xenopus tropicalis, 353.6); eIF3-S9 (Drosophila melanogaster, 329.7); eif-3.B (Caenorhabditis elegans, 207.6); EIF3B-2 (Arabidopsis thaliana, 309.7)

External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser


Comparative analysis of strains

Search table

strain assembly application macro_region gene_coord geneID rnaID protID %id %cov_exon status copyNumber copyID nORFs match_ref_CDS validORF missing_startCodon missing_stopCodon outOfFrame_stopCodon
AKU4011 GCA_001738255.1 Sake Asia CM005309.1:1001942-1004239:- gene-YOR361C_AKU4011 rna-NM_001183781.3_AKU4011 cds-NP_015006.3_AKU4011 99.3 100.0 Verified 1 1 1 False True False False False
BG1 GCA_001932575.1 Bioethanol South America MSHP01000078.1:39117-41414:- gene-YOR361C_BG1 rna-NM_001183781.3_BG1 cds-NP_015006.3_BG1 99.6 100.0 Verified 1 1 1 False True False False False
Bruggeman GCA_001738585.1 Bread Not Applicable CM005517.1:986761-989058:- gene-YOR361C_Bruggeman rna-NM_001183781.3_Bruggeman cds-NP_015006.3_Bruggeman 99.7 100.0 Verified 1 1 1 False True False False False
CAT1 GCA_001738705.1 Bioethanol South America CM005533.1:986589-988886:- gene-YOR361C_CAT1 rna-NM_001183781.3_CAT1 cds-NP_015006.3_CAT1 99.5 100.0 Verified 1 1 1 False True False False False
CBS1585 GCA_001738375.1 Sake Asia CM005373.1:986352-988649:- gene-YOR361C_CBS1585 rna-NM_001183781.3_CBS1585 cds-NP_015006.3_CBS1585 99.3 100.0 Verified 1 1 1 False True False False False
CBS436 GCA_001738355.1 Sake Asia CM005357.1:981172-983469:- gene-YOR361C_CBS436 rna-NM_001183781.3_CBS436 cds-NP_015006.3_CBS436 99.6 100.0 Mismatch 1 1 1 False True False False False
CBS6412 GCA_001738345.1 Sake Asia CM005339.1:215649-217946:- gene-YOR361C_CBS6412 rna-NM_001183781.3_CBS6412 cds-NP_015006.3_CBS6412 99.3 100.0 Mismatch 1 1 1 False True False False False
CBS6413 GCA_001738265.1 Sake Asia CM005325.1:990625-992922:- gene-YOR361C_CBS6413 rna-NM_001183781.3_CBS6413 cds-NP_015006.3_CBS6413 99.3 100.0 Verified 1 1 1 False True False False False
CENPK1137D GCA_000269885.1 Laboratory Not Applicable CM001536.1:1015183-1017474:- gene-YOR361C_CENPK1137D rna-NM_001183781.3_CENPK1137D cds-NP_015006.3_CENPK1137D 100.0 100.0 Verified 1 1 1 True True False False False
EthanolRed GCA_001738615.1 Bioethanol Asia CM005472.1:230651-232948:- gene-YOR361C_EthanolRed rna-NM_001183781.3_EthanolRed cds-NP_015006.3_EthanolRed 99.2 100.0 Verified 1 1 1 False True False False False
FaliES1 GCA_001738715.1 Bioethanol Asia CM005549.1:983480-985777:- gene-YOR361C_FaliES1 rna-NM_001183781.3_FaliES1 cds-NP_015006.3_FaliES1 99.2 100.0 Verified 1 1 1 False True False False False
JAY291 GCA_000182315.2 Bioethanol South America ACFL01000078.1:19898-22195:+ gene-YOR361C_JAY291 rna-NM_001183781.3_JAY291 cds-NP_015006.3_JAY291 99.1 100.0 Verified 1 1 1 False True False False False
MUCL30387 GCA_001738515.1 Bread Europe CM005421.1:996087-998384:- gene-YOR361C_MUCL30387 rna-NM_001183781.3_MUCL30387 cds-NP_015006.3_MUCL30387 99.3 100.0 Verified 1 1 1 False True False False False
MUCL30388 GCA_001738495.1 Bread Europe CM005453.1:1004114-1006411:- gene-YOR361C_MUCL30388 rna-NM_001183781.3_MUCL30388 cds-NP_015006.3_MUCL30388 99.6 100.0 Verified 1 1 1 False True False False False
MUCL39482 GCA_001738235.1 Sake Asia CM005293.1:992887-995184:- gene-YOR361C_MUCL39482 rna-NM_001183781.3_MUCL39482 cds-NP_015006.3_MUCL39482 99.3 100.0 Verified 1 1 1 False True False False False
MUCL42920 GCA_001738485.1 Bread Europe CM005437.1:1000493-1002790:- gene-YOR361C_MUCL42920 rna-NM_001183781.3_MUCL42920 cds-NP_015006.3_MUCL42920 99.3 100.0 Verified 1 1 1 False True False False False
NCIM3186 GCA_001029075.1 Bioethanol Asia CP011824.1:1015250-1017541:- gene-YOR361C_NCIM3186 rna-NM_001183781.3_NCIM3186 cds-NP_015006.3_NCIM3186 95.3 100.0 Verified 1 1 1 False True False False False
NCYC1407 GCA_001738225.1 Sake Asia CM005277.1:993895-996192:- gene-YOR361C_NCYC1407 rna-NM_001183781.3_NCYC1407 cds-NP_015006.3_NCYC1407 99.2 100.0 Verified 1 1 1 False True False False False
PE2H3 GCA_905220325.1 Bioethanol South America HG994154.1:989154-991451:- gene-YOR361C_PE2H3 rna-NM_001183781.3_PE2H3 cds-NP_015006.3_PE2H3 99.1 100.0 Verified 1 1 1 False True False False False
PE2H4 GCA_905220315.1 Bioethanol South America LR999886.1:1005505-1007802:- gene-YOR361C_PE2H4 rna-NM_001183781.3_PE2H4 cds-NP_015006.3_PE2H4 99.1 100.0 Verified 1 1 1 False True False False False
S288C GCF_000146045.2 Laboratory Not applicable NC_001147.6:1015361-1017652:- gene-YOR361C_S288C rna-NM_001183781.3_S288C cds-NP_015006.3_S288C 100.0 100.0 Verified 1 1 1 True True False False False
SA1 GCA_004114265.1 Bioethanol South America SDIA01000016.1:119888-122185:- gene-YOR361C_SA1 rna-NM_001183781.3_SA1 cds-NP_015006.3_SA1 99.6 100.0 Verified 1 1 1 False True False False False
ThermosaccDry GCA_001738605.1 Bioethanol Asia CM005501.1:982650-984947:- gene-YOR361C_ThermosaccDry rna-NM_001183781.3_ThermosaccDry cds-NP_015006.3_ThermosaccDry 99.2 100.0 Verified 1 1 1 False True False False False
VR1 GCA_001738595.1 Bioethanol South America CM005469.1:1043907-1046204:- gene-YOR361C_VR1 rna-NM_001183781.3_VR1 cds-NP_015006.3_VR1 99.3 100.0 Verified 1 1 1 False True False False False
ZTW1 GCA_000308935.1 Bioethanol Asia AMDD01000032.1:715380-717677:- gene-YOR361C_ZTW1 rna-NM_001183781.3_ZTW1 cds-NP_015006.3_ZTW1 99.3 100.0 Verified 1 1 1 False True False False False
Sparadoxus GCF_002079055.1 Not applicable Not applicable NC_047501.1:988840-991130:- gene-YOR361C_Sparadoxus rna-NM_001183781.3_Sparadoxus cds-NP_015006.3_Sparadoxus 90.4 99.4 Unannotated 1 1 0 False False True False False

Additional files