Gene name: PRP9
Reference locus (S288C): YDL030W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor PRP9; Subunit of the SF3a splicing factor complex; required for spliceosome assembly; acts after the formation of the U1 snRNP-pre-mRNA complex; Belongs to the SF3A3 family
Top 10 interactors (score): SYF1 (0.999); PRP11 (0.999); PRP21 (0.999); SME1 (0.999); MSL1 (0.999); PRP19 (0.999); YHC1 (0.999); LEA1 (0.999); SMX2 (0.999); SMX3 (0.999); RSE1 (0.999); CEF1 (0.999); PRP6 (0.999); SMD2 (0.999); SNU66 (0.999); HSH155 (0.999); HSH49 (0.999); SMD3 (0.999); SMB1 (0.999); SMD1 (0.999)
Homologues (species, bitscore): SF3A3 (Homo sapiens, 145.2); Sf3a3 (Mus musculus, 147.9); sf3a3 (Danio rerio, 145.6); sf3a3 (Xenopus tropicalis, 144.4); noi (Drosophila melanogaster, 137.1); T13H5.4 (Caenorhabditis elegans, 141.0); ATO (Arabidopsis thaliana, 138.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:383613-385205:+ | gene-YDL030W_AKU4011 | rna-NM_001180089.1_AKU4011 | cds-NP_010254.1_AKU4011 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000102.1:164664-166256:- | gene-YDL030W_BG1 | rna-NM_001180089.1_BG1 | cds-NP_010254.1_BG1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:402279-403871:+ | gene-YDL030W_Bruggeman | rna-NM_001180089.1_Bruggeman | cds-NP_010254.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:396821-398413:+ | gene-YDL030W_CAT1 | rna-NM_001180089.1_CAT1 | cds-NP_010254.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:380028-381620:+ | gene-YDL030W_CBS1585 | rna-NM_001180089.1_CBS1585 | cds-NP_010254.1_CBS1585 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:397560-399152:+ | gene-YDL030W_CBS436 | rna-NM_001180089.1_CBS436 | cds-NP_010254.1_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:377823-379415:+ | gene-YDL030W_CBS6412 | rna-NM_001180089.1_CBS6412 | cds-NP_010254.1_CBS6412 | 98.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:399790-401382:+ | gene-YDL030W_CBS6413 | rna-NM_001180089.1_CBS6413 | cds-NP_010254.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:396396-397988:+ | gene-YDL030W_CENPK1137D | rna-NM_001180089.1_CENPK1137D | cds-NP_010254.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:392443-394035:+ | gene-YDL030W_EthanolRed | rna-NM_001180089.1_EthanolRed | cds-NP_010254.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:398635-400227:+ | gene-YDL030W_FaliES1 | rna-NM_001180089.1_FaliES1 | cds-NP_010254.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000370.1:13179-14771:+ | gene-YDL030W_JAY291 | rna-NM_001180089.1_JAY291 | cds-NP_010254.1_JAY291 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:398010-399602:+ | gene-YDL030W_MUCL30387 | rna-NM_001180089.1_MUCL30387 | cds-NP_010254.1_MUCL30387 | 98.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:388524-390116:+ | gene-YDL030W_MUCL30388 | rna-NM_001180089.1_MUCL30388 | cds-NP_010254.1_MUCL30388 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:381206-382798:+ | gene-YDL030W_MUCL39482 | rna-NM_001180089.1_MUCL39482 | cds-NP_010254.1_MUCL39482 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:303570-305162:+ | gene-YDL030W_MUCL42920 | rna-NM_001180089.1_MUCL42920 | cds-NP_010254.1_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:397460-399052:+ | gene-YDL030W_NCIM3186 | rna-NM_001180089.1_NCIM3186 | cds-NP_010254.1_NCIM3186 | 97.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:381121-382713:+ | gene-YDL030W_NCYC1407 | rna-NM_001180089.1_NCYC1407 | cds-NP_010254.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:388660-390252:+ | gene-YDL030W_PE2H3 | rna-NM_001180089.1_PE2H3 | cds-NP_010254.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:388018-389610:+ | gene-YDL030W_PE2H4 | rna-NM_001180089.1_PE2H4 | cds-NP_010254.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:397537-399129:+ | gene-YDL030W_S288C | rna-NM_001180089.1_S288C | cds-NP_010254.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000010.1:35809-37401:- | gene-YDL030W_SA1 | rna-NM_001180089.1_SA1 | cds-NP_010254.1_SA1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:398093-399685:+ | gene-YDL030W_ThermosaccDry | rna-NM_001180089.1_ThermosaccDry | cds-NP_010254.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:401154-402746:+ | gene-YDL030W_VR1 | rna-NM_001180089.1_VR1 | cds-NP_010254.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000006.1:395995-397587:+ | gene-YDL030W_ZTW1 | rna-NM_001180089.1_ZTW1 | cds-NP_010254.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:400200-401795:+ | gene-YDL030W_Sparadoxus | rna-NM_001180089.1_Sparadoxus | cds-NP_010254.1_Sparadoxus | 87.9 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |