Gene name: PRP6
Reference locus (S288C): YBR055C
Gene biotype: protein_coding
Description: U4/U6-U5 snRNP complex subunit PRP6; Splicing factor; component of the U4/U6-U5 snRNP complex
Top 10 interactors (score): SNU13 (0.999); LSM4 (0.999); MSL1 (0.999); SMD1 (0.999); PRP11 (0.999); PRP4 (0.999); SME1 (0.999); PRP31 (0.999); SMX2 (0.999); PRP21 (0.999); PRP3 (0.999); LSM2 (0.999); LSM8 (0.999); SMX3 (0.999); SNU114 (0.999); RSE1 (0.999); BRR2 (0.999); CUS1 (0.999); PRP8 (0.999); LSM5 (0.999)
Homologues (species, bitscore): PRPF6 (Homo sapiens, 330.1); Prpf6 (Mus musculus, 329.3); prpf6 (Danio rerio, 104.0); prpf6 (Xenopus tropicalis, 327.8); CG6841 (Drosophila melanogaster, 320.1); prp-6 (Caenorhabditis elegans, 275.8); EMB2770 (Arabidopsis thaliana, 313.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:327031-329730:- | gene-YBR055C_AKU4011 | rna-NM_001178403.1_AKU4011 | cds-NP_009611.1_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000179.1:317196-319895:- | gene-YBR055C_BG1 | rna-NM_001178403.1_BG1 | cds-NP_009611.1_BG1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:327765-330464:- | gene-YBR055C_Bruggeman | rna-NM_001178403.1_Bruggeman | cds-NP_009611.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:331451-334150:- | gene-YBR055C_CAT1 | rna-NM_001178403.1_CAT1 | cds-NP_009611.1_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:319327-322026:- | gene-YBR055C_CBS1585 | rna-NM_001178403.1_CBS1585 | cds-NP_009611.1_CBS1585 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:327337-330036:- | gene-YBR055C_CBS436 | rna-NM_001178403.1_CBS436 | cds-NP_009611.1_CBS436 | 99.3 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:417545-420244:- | gene-YBR055C_CBS6412 | rna-NM_001178403.1_CBS6412 | cds-NP_009611.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:324443-327142:- | gene-YBR055C_CBS6413 | rna-NM_001178403.1_CBS6413 | cds-NP_009611.1_CBS6413 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:338362-341061:- | gene-YBR055C_CENPK1137D | rna-NM_001178403.1_CENPK1137D | cds-NP_009611.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:453808-456507:- | gene-YBR055C_EthanolRed | rna-NM_001178403.1_EthanolRed | cds-NP_009611.1_EthanolRed | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:343086-345785:- | gene-YBR055C_FaliES1 | rna-NM_001178403.1_FaliES1 | cds-NP_009611.1_FaliES1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000209.1:10940-13639:- | gene-YBR055C_JAY291 | rna-NM_001178403.1_JAY291 | cds-NP_009611.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:329390-332089:- | gene-YBR055C_MUCL30387 | rna-NM_001178403.1_MUCL30387 | cds-NP_009611.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:329167-331866:- | gene-YBR055C_MUCL30388 | rna-NM_001178403.1_MUCL30388 | cds-NP_009611.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:319315-322014:- | gene-YBR055C_MUCL39482 | rna-NM_001178403.1_MUCL39482 | cds-NP_009611.1_MUCL39482 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:326514-329213:- | gene-YBR055C_MUCL42920 | rna-NM_001178403.1_MUCL42920 | cds-NP_009611.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:344399-347098:- | gene-YBR055C_NCIM3186 | rna-NM_001178403.1_NCIM3186 | cds-NP_009611.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:320225-322924:- | gene-YBR055C_NCYC1407 | rna-NM_001178403.1_NCYC1407 | cds-NP_009611.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:332402-335101:- | gene-YBR055C_PE2H3 | rna-NM_001178403.1_PE2H3 | cds-NP_009611.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:330078-332777:- | gene-YBR055C_PE2H4 | rna-NM_001178403.1_PE2H4 | cds-NP_009611.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:344602-347301:- | gene-YBR055C_S288C | rna-NM_001178403.1_S288C | cds-NP_009611.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000017.1:130242-132941:+ | gene-YBR055C_SA1 | rna-NM_001178403.1_SA1 | cds-NP_009611.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:342097-344796:- | gene-YBR055C_ThermosaccDry | rna-NM_001178403.1_ThermosaccDry | cds-NP_009611.1_ThermosaccDry | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:324004-326703:- | gene-YBR055C_VR1 | rna-NM_001178403.1_VR1 | cds-NP_009611.1_VR1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:317809-320509:- | gene-YBR055C_ZTW1 | rna-NM_001178403.1_ZTW1 | cds-NP_009611.1_ZTW1 | 99.6 | 100.0 | Unannotated | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:354367-357066:- | gene-YBR055C_Sparadoxus | rna-NM_001178403.1_Sparadoxus | cds-NP_009611.1_Sparadoxus | 87.0 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |