Gene name: PRP5
Reference locus (S288C): YBR237W
Gene biotype: protein_coding
Description: Pre-mRNA-processing ATP-dependent RNA helicase PRP5; RNA helicase in the DEAD-box family; necessary for prespliceosome formation, bridges U1 and U2 snRNPs and enables stable U2 snRNP association with intron RNA; Belongs to the DEAD box helicase family. DDX46/PRP5 subfamily
Top 10 interactors (score): HSH155 (0.999); PRP11 (0.998); PRP9 (0.998); CUS1 (0.998); CUS2 (0.995); PRP21 (0.993); HSH49 (0.992); RSE1 (0.99); PRP16 (0.983); RDS3 (0.976); PRP22 (0.97); MSL1 (0.966); PRP43 (0.962); MSL5 (0.95); YSF3 (0.948); PRP2 (0.944); SNU71 (0.932); PRP19 (0.932); MUD2 (0.931); PRP40 (0.926)
Homologues (species, bitscore): DDX46 (Homo sapiens, 394.4); Ddx46 (Mus musculus, 399.1); ddx46 (Danio rerio, 387.9); ddx46 (Xenopus tropicalis, 387.5); CG6227 (Drosophila melanogaster, 361.3); F53H1.1 (Caenorhabditis elegans, 374.0); AT1G20920 (Arabidopsis thaliana, 417.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005296.1:676276-678825:+ | gene-YBR237W_AKU4011 | rna-NM_001178585.1_AKU4011 | cds-NP_009796.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000066.1:47239-49788:+ | gene-YBR237W_BG1 | rna-NM_001178585.1_BG1 | cds-NP_009796.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005504.1:677431-679980:+ | gene-YBR237W_Bruggeman | rna-NM_001178585.1_Bruggeman | cds-NP_009796.1_Bruggeman | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005520.1:680886-683435:+ | gene-YBR237W_CAT1 | rna-NM_001178585.1_CAT1 | cds-NP_009796.1_CAT1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005360.1:667808-670357:+ | gene-YBR237W_CBS1585 | rna-NM_001178585.1_CBS1585 | cds-NP_009796.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005344.1:674233-676782:+ | gene-YBR237W_CBS436 | rna-NM_001178585.1_CBS436 | cds-NP_009796.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005328.1:762788-765337:+ | gene-YBR237W_CBS6412 | rna-NM_001178585.1_CBS6412 | cds-NP_009796.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005312.1:673851-676400:+ | gene-YBR237W_CBS6413 | rna-NM_001178585.1_CBS6413 | cds-NP_009796.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001523.1:685746-688295:+ | gene-YBR237W_CENPK1137D | rna-NM_001178585.1_CENPK1137D | cds-NP_009796.1_CENPK1137D | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005472.1:799517-802066:+ | gene-YBR237W_EthanolRed | rna-NM_001178585.1_EthanolRed | cds-NP_009796.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005536.1:692624-695173:+ | gene-YBR237W_FaliES1 | rna-NM_001178585.1_FaliES1 | cds-NP_009796.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000067.1:107177-109726:- | gene-YBR237W_JAY291 | rna-NM_001178585.1_JAY291 | cds-NP_009796.1_JAY291 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005408.1:679447-681996:+ | gene-YBR237W_MUCL30387 | rna-NM_001178585.1_MUCL30387 | cds-NP_009796.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005440.1:696526-699075:+ | gene-YBR237W_MUCL30388 | rna-NM_001178585.1_MUCL30388 | cds-NP_009796.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005280.1:666160-668709:+ | gene-YBR237W_MUCL39482 | rna-NM_001178585.1_MUCL39482 | cds-NP_009796.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005424.1:676009-678558:+ | gene-YBR237W_MUCL42920 | rna-NM_001178585.1_MUCL42920 | cds-NP_009796.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011811.1:691766-694315:+ | gene-YBR237W_NCIM3186 | rna-NM_001178585.1_NCIM3186 | cds-NP_009796.1_NCIM3186 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005264.1:668023-670572:+ | gene-YBR237W_NCYC1407 | rna-NM_001178585.1_NCYC1407 | cds-NP_009796.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994141.1:691139-693688:+ | gene-YBR237W_PE2H3 | rna-NM_001178585.1_PE2H3 | cds-NP_009796.1_PE2H3 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999873.1:688815-691364:+ | gene-YBR237W_PE2H4 | rna-NM_001178585.1_PE2H4 | cds-NP_009796.1_PE2H4 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001134.8:691969-694518:+ | gene-YBR237W_S288C | rna-NM_001178585.1_S288C | cds-NP_009796.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000019.1:47096-49645:+ | gene-YBR237W_SA1 | rna-NM_001178585.1_SA1 | cds-NP_009796.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005488.1:691634-694183:+ | gene-YBR237W_ThermosaccDry | rna-NM_001178585.1_ThermosaccDry | cds-NP_009796.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005456.1:671813-674362:+ | gene-YBR237W_VR1 | rna-NM_001178585.1_VR1 | cds-NP_009796.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000003.1:664497-667046:+ | gene-YBR237W_ZTW1 | rna-NM_001178585.1_ZTW1 | cds-NP_009796.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047488.1:708483-711035:+ | gene-YBR237W_Sparadoxus | rna-NM_001178585.1_Sparadoxus | cds-NP_009796.1_Sparadoxus | 88.8 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |