Gene name: PRP46
Reference locus (S288C): YPL151C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor PRP46; Member of the NineTeen Complex (NTC); this complex contains Prp19p and stabilizes U6 snRNA in catalytic forms of the spliceosome containing U2, U5, and U6 snRNAs
Top 10 interactors (score): ISY1 (0.999); PRP22 (0.999); NTC20 (0.999); CLF1 (0.999); SYF1 (0.999); BUD31 (0.999); PRP45 (0.999); CDC40 (0.999); SMB1 (0.999); YJU2 (0.999); CEF1 (0.999); SMD2 (0.999); SNU114 (0.999); CWC2 (0.999); SYF2 (0.999); PRP19 (0.999); LEA1 (0.999); BRR2 (0.999); PRP8 (0.999); ECM2 (0.999)
Homologues (species, bitscore): PLRG1 (Homo sapiens, 370.9); Plrg1 (Mus musculus, 369.0); plrg1 (Danio rerio, 371.7); plrg1 (Xenopus tropicalis, 374.8); Tango4 (Drosophila melanogaster, 374.8); tag-135 (Caenorhabditis elegans, 372.9); PRL1 (Arabidopsis thaliana, 379.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:243835-245190:- | gene-YPL151C_AKU4011 | rna-NM_001183965.1_AKU4011 | cds-NP_015174.1_AKU4011 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:449523-450878:- | gene-YPL151C_BG1 | rna-NM_001183965.1_BG1 | cds-NP_015174.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:269828-271183:- | gene-YPL151C_Bruggeman | rna-NM_001183965.1_Bruggeman | cds-NP_015174.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:266512-267867:- | gene-YPL151C_CAT1 | rna-NM_001183965.1_CAT1 | cds-NP_015174.1_CAT1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:247898-249253:- | gene-YPL151C_CBS1585 | rna-NM_001183965.1_CBS1585 | cds-NP_015174.1_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:262575-263930:- | gene-YPL151C_CBS436 | rna-NM_001183965.1_CBS436 | cds-NP_015174.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:252576-253931:- | gene-YPL151C_CBS6412 | rna-NM_001183965.1_CBS6412 | cds-NP_015174.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:244538-245893:- | gene-YPL151C_CBS6413 | rna-NM_001183965.1_CBS6413 | cds-NP_015174.1_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:266082-267437:- | gene-YPL151C_CENPK1137D | rna-NM_001183965.1_CENPK1137D | cds-NP_015174.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:242525-243880:- | gene-YPL151C_EthanolRed | rna-NM_001183965.1_EthanolRed | cds-NP_015174.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:250117-251472:- | gene-YPL151C_FaliES1 | rna-NM_001183965.1_FaliES1 | cds-NP_015174.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000007.1:114378-115733:+ | gene-YPL151C_JAY291 | rna-NM_001183965.1_JAY291 | cds-NP_015174.1_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:261071-262426:- | gene-YPL151C_MUCL30387 | rna-NM_001183965.1_MUCL30387 | cds-NP_015174.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:259088-260443:- | gene-YPL151C_MUCL30388 | rna-NM_001183965.1_MUCL30388 | cds-NP_015174.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:241227-242582:- | gene-YPL151C_MUCL39482 | rna-NM_001183965.1_MUCL39482 | cds-NP_015174.1_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:298468-299823:- | gene-YPL151C_MUCL42920 | rna-NM_001183965.1_MUCL42920 | cds-NP_015174.1_MUCL42920 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:266163-267518:- | gene-YPL151C_NCIM3186 | rna-NM_001183965.1_NCIM3186 | cds-NP_015174.1_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:247690-249045:- | gene-YPL151C_NCYC1407 | rna-NM_001183965.1_NCYC1407 | cds-NP_015174.1_NCYC1407 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:255136-256491:- | gene-YPL151C_PE2H3 | rna-NM_001183965.1_PE2H3 | cds-NP_015174.1_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:254768-256123:- | gene-YPL151C_PE2H4 | rna-NM_001183965.1_PE2H4 | cds-NP_015174.1_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:266180-267535:- | gene-YPL151C_S288C | rna-NM_001183965.1_S288C | cds-NP_015174.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000012.1:106152-107507:+ | gene-YPL151C_SA1 | rna-NM_001183965.1_SA1 | cds-NP_015174.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:249915-251270:- | gene-YPL151C_ThermosaccDry | rna-NM_001183965.1_ThermosaccDry | cds-NP_015174.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:264896-266251:- | gene-YPL151C_VR1 | rna-NM_001183965.1_VR1 | cds-NP_015174.1_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:249243-250598:- | gene-YPL151C_ZTW1 | rna-NM_001183965.1_ZTW1 | cds-NP_015174.1_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:250885-252240:- | gene-YPL151C_Sparadoxus | rna-NM_001183965.1_Sparadoxus | cds-NP_015174.1_Sparadoxus | 89.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |