Gene name: PRP45
Reference locus (S288C): YAL032C
Gene biotype: protein_coding
Description: Snw domain-containing protein 1; Pre-mRNA-processing protein 45; Protein required for pre-mRNA splicing; associates with the spliceosome and interacts with splicing factors Prp22p and Prp46p; orthologous to human transcriptional coactivator SKIP and can activate transcription of a reporter gene
Top 10 interactors (score): CLF1 (0.999); PRP16 (0.999); CAM1 (0.999); PRP46 (0.999); LEA1 (0.999); BRR2 (0.999); PRP8 (0.999); TEF4 (0.999); ISY1 (0.999); SYF1 (0.999); PRP22 (0.999); SNU114 (0.999); CWC2 (0.999); PRP43 (0.999); PRP19 (0.999); CWC15 (0.999); SYF2 (0.999); BUD31 (0.999); SNT309 (0.999); ECM2 (0.999)
Homologues (species, bitscore): SNW1 (Homo sapiens, 103.2); Snw1 (Mus musculus, 103.2); snw1 (Danio rerio, 89.4); snw1 (Xenopus tropicalis, 103.6); Bx42 (Drosophila melanogaster, 97.4); skp-1 (Caenorhabditis elegans, 109.4); SKIP (Arabidopsis thaliana, 91.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005295.1:68460-69599:- | gene-YAL032C_AKU4011 | rna-NM_001178177.1_AKU4011 | cds-NP_009370.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000070.1:55589-56728:- | gene-YAL032C_BG1 | rna-NM_001178177.1_BG1 | cds-NP_009370.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005503.1:83341-84480:- | gene-YAL032C_Bruggeman | rna-NM_001178177.1_Bruggeman | cds-NP_009370.1_Bruggeman | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005519.1:69687-70826:- | gene-YAL032C_CAT1 | rna-NM_001178177.1_CAT1 | cds-NP_009370.1_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005359.1:81477-82616:- | gene-YAL032C_CBS1585 | rna-NM_001178177.1_CBS1585 | cds-NP_009370.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005343.1:81728-82867:- | gene-YAL032C_CBS436 | rna-NM_001178177.1_CBS436 | cds-NP_009370.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005327.1:67623-68762:- | gene-YAL032C_CBS6412 | rna-NM_001178177.1_CBS6412 | cds-NP_009370.1_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 0 | False | False | False | True | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005311.1:79742-80881:- | gene-YAL032C_CBS6413 | rna-NM_001178177.1_CBS6413 | cds-NP_009370.1_CBS6413 | 99.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001522.1:83425-84564:- | gene-YAL032C_CENPK1137D | rna-NM_001178177.1_CENPK1137D | cds-NP_009370.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005471.1:69881-71020:- | gene-YAL032C_EthanolRed | rna-NM_001178177.1_EthanolRed | cds-NP_009370.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005535.1:84504-85643:- | gene-YAL032C_FaliES1 | rna-NM_001178177.1_FaliES1 | cds-NP_009370.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000084.1:55779-56918:- | gene-YAL032C_JAY291 | rna-NM_001178177.1_JAY291 | cds-NP_009370.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005407.1:84430-85569:- | gene-YAL032C_MUCL30387 | rna-NM_001178177.1_MUCL30387 | cds-NP_009370.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005439.1:80980-82119:- | gene-YAL032C_MUCL30388 | rna-NM_001178177.1_MUCL30388 | cds-NP_009370.1_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005279.1:80263-81402:- | gene-YAL032C_MUCL39482 | rna-NM_001178177.1_MUCL39482 | cds-NP_009370.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005423.1:82636-83775:- | gene-YAL032C_MUCL42920 | rna-NM_001178177.1_MUCL42920 | cds-NP_009370.1_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011810.1:83212-84351:- | gene-YAL032C_NCIM3186 | rna-NM_001178177.1_NCIM3186 | cds-NP_009370.1_NCIM3186 | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005263.1:68142-69281:- | gene-YAL032C_NCYC1407 | rna-NM_001178177.1_NCYC1407 | cds-NP_009370.1_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994140.1:70049-71188:- | gene-YAL032C_PE2H3 | rna-NM_001178177.1_PE2H3 | cds-NP_009370.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999872.1:69768-70907:- | gene-YAL032C_PE2H4 | rna-NM_001178177.1_PE2H4 | cds-NP_009370.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001133.9:83335-84474:- | gene-YAL032C_S288C | rna-NM_001178177.1_S288C | cds-NP_009370.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000059.1:12459-13598:- | gene-YAL032C_SA1 | rna-NM_001178177.1_SA1 | cds-NP_009370.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005487.1:84022-85161:- | gene-YAL032C_ThermosaccDry | rna-NM_001178177.1_ThermosaccDry | cds-NP_009370.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005455.1:85303-86442:- | gene-YAL032C_VR1 | rna-NM_001178177.1_VR1 | cds-NP_009370.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000002.1:55842-56981:- | gene-YAL032C_ZTW1 | rna-NM_001178177.1_ZTW1 | cds-NP_009370.1_ZTW1 | 99.0 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047487.1:73406-74542:- | gene-YAL032C_Sparadoxus | rna-NM_001178177.1_Sparadoxus | cds-NP_009370.1_Sparadoxus | 89.6 | 99.7 | Verified | 1 | 1 | 0 | False | False | False | True | False |