Gene name: PRP42
Reference locus (S288C): YDR235W
Gene biotype: protein_coding
Description: U1 small nuclear ribonucleoprotein component PRP42; U1 snRNP protein involved in splicing; required for U1 snRNP biogenesis; contains multiple tetriatricopeptide repeats
Top 10 interactors (score): SNU71 (0.999); LEA1 (0.999); YHC1 (0.999); SNU56 (0.999); MUD1 (0.999); NAM8 (0.999); SNP1 (0.999); LUC7 (0.999); HSH155 (0.999); PRP40 (0.999); SMB1 (0.998); PRP39 (0.997); PRP21 (0.996); SMX3 (0.996); SMD3 (0.995); RSE1 (0.995); CUS1 (0.995); SMD2 (0.993); STO1 (0.992); CBC2 (0.992)
Homologues (species, bitscore): PRPF39 (Homo sapiens, 80.5); Prpf39 (Mus musculus, 81.3); prpf39 (Danio rerio, 61.2); prpf39.1 (Xenopus tropicalis, 82.0); CG1646 (Drosophila melanogaster, 52.4); F25B4.5 (Caenorhabditis elegans, 58.5); PRP39 (Arabidopsis thaliana, 55.5)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:890180-891814:+ | gene-YDR235W_AKU4011 | rna-NM_001180543.1_AKU4011 | cds-NP_010521.1_AKU4011 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:233994-235628:- | gene-YDR235W_BG1 | rna-NM_001180543.1_BG1 | cds-NP_010521.1_BG1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:922506-924140:+ | gene-YDR235W_Bruggeman | rna-NM_001180543.1_Bruggeman | cds-NP_010521.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:909792-911426:+ | gene-YDR235W_CAT1 | rna-NM_001180543.1_CAT1 | cds-NP_010521.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:880529-882163:+ | gene-YDR235W_CBS1585 | rna-NM_001180543.1_CBS1585 | cds-NP_010521.1_CBS1585 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:909559-911193:+ | gene-YDR235W_CBS436 | rna-NM_001180543.1_CBS436 | cds-NP_010521.1_CBS436 | 99.7 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:877289-878923:+ | gene-YDR235W_CBS6412 | rna-NM_001180543.1_CBS6412 | cds-NP_010521.1_CBS6412 | 98.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:907891-909525:+ | gene-YDR235W_CBS6413 | rna-NM_001180543.1_CBS6413 | cds-NP_010521.1_CBS6413 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:932434-934068:+ | gene-YDR235W_CENPK1137D | rna-NM_001180543.1_CENPK1137D | cds-NP_010521.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:890913-892547:+ | gene-YDR235W_EthanolRed | rna-NM_001180543.1_EthanolRed | cds-NP_010521.1_EthanolRed | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:899115-900749:+ | gene-YDR235W_FaliES1 | rna-NM_001180543.1_FaliES1 | cds-NP_010521.1_FaliES1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000348.1:10845-12479:- | gene-YDR235W_JAY291 | rna-NM_001180543.1_JAY291 | cds-NP_010521.1_JAY291 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:908404-910038:+ | gene-YDR235W_MUCL30387 | rna-NM_001180543.1_MUCL30387 | cds-NP_010521.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:896434-898068:+ | gene-YDR235W_MUCL30388 | rna-NM_001180543.1_MUCL30388 | cds-NP_010521.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:881934-883568:+ | gene-YDR235W_MUCL39482 | rna-NM_001180543.1_MUCL39482 | cds-NP_010521.1_MUCL39482 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:821209-822843:+ | gene-YDR235W_MUCL42920 | rna-NM_001180543.1_MUCL42920 | cds-NP_010521.1_MUCL42920 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:933427-935061:+ | gene-YDR235W_NCIM3186 | rna-NM_001180543.1_NCIM3186 | cds-NP_010521.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:885602-887236:+ | gene-YDR235W_NCYC1407 | rna-NM_001180543.1_NCYC1407 | cds-NP_010521.1_NCYC1407 | 98.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:901861-903495:+ | gene-YDR235W_PE2H3 | rna-NM_001180543.1_PE2H3 | cds-NP_010521.1_PE2H3 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:907138-908772:+ | gene-YDR235W_PE2H4 | rna-NM_001180543.1_PE2H4 | cds-NP_010521.1_PE2H4 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:933504-935138:+ | gene-YDR235W_S288C | rna-NM_001180543.1_S288C | cds-NP_010521.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:139698-141332:+ | gene-YDR235W_SA1 | rna-NM_001180543.1_SA1 | cds-NP_010521.1_SA1 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:897269-898903:+ | gene-YDR235W_ThermosaccDry | rna-NM_001180543.1_ThermosaccDry | cds-NP_010521.1_ThermosaccDry | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:912461-914095:+ | gene-YDR235W_VR1 | rna-NM_001180543.1_VR1 | cds-NP_010521.1_VR1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:159951-161585:+ | gene-YDR235W_ZTW1 | rna-NM_001180543.1_ZTW1 | cds-NP_010521.1_ZTW1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:902136-903770:+ | gene-YDR235W_Sparadoxus | rna-NM_001180543.1_Sparadoxus | cds-NP_010521.1_Sparadoxus | 90.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |