Gene name: PRP40
Reference locus (S288C): YKL012W
Gene biotype: protein_coding
Description: Pre-mRNA-processing protein PRP40; U1 snRNP protein involved in splicing; interacts with the branchpoint-binding protein during the formation of the second commitment complex
Top 10 interactors (score): PRP42 (0.999); SNP1 (0.999); CEF1 (0.999); SNU66 (0.999); PRP39 (0.999); NAM8 (0.999); LEA1 (0.999); YHC1 (0.999); SNU71 (0.999); SNU56 (0.999); LUC7 (0.999); CLF1 (0.998); SMD3 (0.998); MUD1 (0.998); SMB1 (0.998); MSL5 (0.998); SMD1 (0.997); SMX3 (0.996); CUS1 (0.996); SMX2 (0.995)
Homologues (species, bitscore): PRPF40B (Homo sapiens, 145.2); Prpf40b (Mus musculus, 149.8); prpf40a (Danio rerio, 168.3); prpf40b (Xenopus tropicalis, 135.6); CG3542 (Drosophila melanogaster, 126.3); ZK1098.1 (Caenorhabditis elegans, 94.4); PRP40A (Arabidopsis thaliana, 92.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005305.1:404328-406079:+ | gene-YKL012W_AKU4011 | rna-NM_001179578.3_AKU4011 | cds-NP_012913.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000113.1:237824-239575:- | gene-YKL012W_BG1 | rna-NM_001179578.3_BG1 | cds-NP_012913.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005513.1:426033-427784:+ | gene-YKL012W_Bruggeman | rna-NM_001179578.3_Bruggeman | cds-NP_012913.3_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005529.1:421140-422891:+ | gene-YKL012W_CAT1 | rna-NM_001179578.3_CAT1 | cds-NP_012913.3_CAT1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005369.1:417048-418799:+ | gene-YKL012W_CBS1585 | rna-NM_001179578.3_CBS1585 | cds-NP_012913.3_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005353.1:415911-417662:+ | gene-YKL012W_CBS436 | rna-NM_001179578.3_CBS436 | cds-NP_012913.3_CBS436 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005337.1:401204-402955:+ | gene-YKL012W_CBS6412 | rna-NM_001179578.3_CBS6412 | cds-NP_012913.3_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005321.1:416903-418654:+ | gene-YKL012W_CBS6413 | rna-NM_001179578.3_CBS6413 | cds-NP_012913.3_CBS6413 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001532.1:417987-419738:+ | gene-YKL012W_CENPK1137D | rna-NM_001179578.3_CENPK1137D | cds-NP_012913.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005481.1:414825-416576:+ | gene-YKL012W_EthanolRed | rna-NM_001179578.3_EthanolRed | cds-NP_012913.3_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005545.1:416915-418666:+ | gene-YKL012W_FaliES1 | rna-NM_001179578.3_FaliES1 | cds-NP_012913.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000142.1:12385-14136:- | gene-YKL012W_JAY291 | rna-NM_001179578.3_JAY291 | cds-NP_012913.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005417.1:425348-427099:+ | gene-YKL012W_MUCL30387 | rna-NM_001179578.3_MUCL30387 | cds-NP_012913.3_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005449.1:420957-422708:+ | gene-YKL012W_MUCL30388 | rna-NM_001179578.3_MUCL30388 | cds-NP_012913.3_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005289.1:416365-418116:+ | gene-YKL012W_MUCL39482 | rna-NM_001179578.3_MUCL39482 | cds-NP_012913.3_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005433.1:422194-423945:+ | gene-YKL012W_MUCL42920 | rna-NM_001179578.3_MUCL42920 | cds-NP_012913.3_MUCL42920 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011820.1:418299-420050:+ | gene-YKL012W_NCIM3186 | rna-NM_001179578.3_NCIM3186 | cds-NP_012913.3_NCIM3186 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005273.1:416557-418308:+ | gene-YKL012W_NCYC1407 | rna-NM_001179578.3_NCYC1407 | cds-NP_012913.3_NCYC1407 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994150.1:441248-442999:+ | gene-YKL012W_PE2H3 | rna-NM_001179578.3_PE2H3 | cds-NP_012913.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999882.1:425990-427741:+ | gene-YKL012W_PE2H4 | rna-NM_001179578.3_PE2H4 | cds-NP_012913.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001143.9:418310-420061:+ | gene-YKL012W_S288C | rna-NM_001179578.3_S288C | cds-NP_012913.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000027.1:96592-98343:+ | gene-YKL012W_SA1 | rna-NM_001179578.3_SA1 | cds-NP_012913.3_SA1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005497.1:417014-418765:+ | gene-YKL012W_ThermosaccDry | rna-NM_001179578.3_ThermosaccDry | cds-NP_012913.3_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005465.1:416270-418021:+ | gene-YKL012W_VR1 | rna-NM_001179578.3_VR1 | cds-NP_012913.3_VR1 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000022.1:415042-416793:+ | gene-YKL012W_ZTW1 | rna-NM_001179578.3_ZTW1 | cds-NP_012913.3_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047497.1:440018-441769:+ | gene-YKL012W_Sparadoxus | rna-NM_001179578.3_Sparadoxus | cds-NP_012913.3_Sparadoxus | 88.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |