Gene name: PRP4
Reference locus (S288C): YPR178W
Gene biotype: protein_coding
Description: U4/U6 small nuclear ribonucleoprotein PRP4; Splicing factor; component of the U4/U6-U5 snRNP complex
Top 10 interactors (score): PRP31 (0.999); PRP11 (0.999); LSM6 (0.999); LSM4 (0.999); SNU13 (0.999); SMD3 (0.999); SMB1 (0.999); SMD2 (0.999); SNU66 (0.999); PRP6 (0.999); LSM5 (0.999); PRP8 (0.999); BRR2 (0.999); SMX3 (0.999); SMX2 (0.999); SNU114 (0.999); LSM2 (0.999); LSM8 (0.999); LSM7 (0.999); SME1 (0.999)
Homologues (species, bitscore): PRPF4 (Homo sapiens, 259.2); Prpf4 (Mus musculus, 259.2); prpf4 (Danio rerio, 268.9); gnb1 (Xenopus tropicalis, 117.5); U4-U6-60K (Drosophila melanogaster, 251.9); prp-4 (Caenorhabditis elegans, 243.8); LIS (Arabidopsis thaliana, 235.0)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005310.1:846611-848008:+ | gene-YPR178W_AKU4011 | rna-NM_001184275.1_AKU4011 | cds-NP_015504.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000091.1:49702-51099:- | gene-YPR178W_BG1 | rna-NM_001184275.1_BG1 | cds-NP_015504.1_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005518.1:927895-929292:+ | gene-YPR178W_Bruggeman | rna-NM_001184275.1_Bruggeman | cds-NP_015504.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005534.1:969951-971348:+ | gene-YPR178W_CAT1 | rna-NM_001184275.1_CAT1 | cds-NP_015504.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005374.1:851413-852810:+ | gene-YPR178W_CBS1585 | rna-NM_001184275.1_CBS1585 | cds-NP_015504.1_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005358.1:864959-866356:+ | gene-YPR178W_CBS436 | rna-NM_001184275.1_CBS436 | cds-NP_015504.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005342.1:853197-854594:+ | gene-YPR178W_CBS6412 | rna-NM_001184275.1_CBS6412 | cds-NP_015504.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005326.1:848341-849738:+ | gene-YPR178W_CBS6413 | rna-NM_001184275.1_CBS6413 | cds-NP_015504.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001537.1:892417-893814:+ | gene-YPR178W_CENPK1137D | rna-NM_001184275.1_CENPK1137D | cds-NP_015504.1_CENPK1137D | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:1168373-1169770:+ | gene-YPR178W_EthanolRed | rna-NM_001184275.1_EthanolRed | cds-NP_015504.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005550.1:848446-849843:+ | gene-YPR178W_FaliES1 | rna-NM_001184275.1_FaliES1 | cds-NP_015504.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000081.1:35742-37139:+ | gene-YPR178W_JAY291 | rna-NM_001184275.1_JAY291 | cds-NP_015504.1_JAY291 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005422.1:895141-896538:+ | gene-YPR178W_MUCL30387 | rna-NM_001184275.1_MUCL30387 | cds-NP_015504.1_MUCL30387 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005454.1:869270-870667:+ | gene-YPR178W_MUCL30388 | rna-NM_001184275.1_MUCL30388 | cds-NP_015504.1_MUCL30388 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005294.1:843613-845010:+ | gene-YPR178W_MUCL39482 | rna-NM_001184275.1_MUCL39482 | cds-NP_015504.1_MUCL39482 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005438.1:908083-909480:+ | gene-YPR178W_MUCL42920 | rna-NM_001184275.1_MUCL42920 | cds-NP_015504.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011825.1:892315-893712:+ | gene-YPR178W_NCIM3186 | rna-NM_001184275.1_NCIM3186 | cds-NP_015504.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005278.1:851974-853371:+ | gene-YPR178W_NCYC1407 | rna-NM_001184275.1_NCYC1407 | cds-NP_015504.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994155.1:864266-865663:+ | gene-YPR178W_PE2H3 | rna-NM_001184275.1_PE2H3 | cds-NP_015504.1_PE2H3 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999887.1:863914-865311:+ | gene-YPR178W_PE2H4 | rna-NM_001184275.1_PE2H4 | cds-NP_015504.1_PE2H4 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001148.4:892332-893729:+ | gene-YPR178W_S288C | rna-NM_001184275.1_S288C | cds-NP_015504.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000060.1:32083-33480:- | gene-YPR178W_SA1 | rna-NM_001184275.1_SA1 | cds-NP_015504.1_SA1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005502.1:848134-849531:+ | gene-YPR178W_ThermosaccDry | rna-NM_001184275.1_ThermosaccDry | cds-NP_015504.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005470.1:875921-877318:+ | gene-YPR178W_VR1 | rna-NM_001184275.1_VR1 | cds-NP_015504.1_VR1 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000033.1:850683-852080:+ | gene-YPR178W_ZTW1 | rna-NM_001184275.1_ZTW1 | cds-NP_015504.1_ZTW1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047502.1:852755-854152:+ | gene-YPR178W_Sparadoxus | rna-NM_001184275.1_Sparadoxus | cds-NP_015504.1_Sparadoxus | 89.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |