Gene name: PRP39
Reference locus (S288C): YML046W
Gene biotype: protein_coding
Description: Pre-mRNA-processing factor 39; U1 snRNP protein involved in splicing; contains multiple tetriatricopeptide repeats
Top 10 interactors (score): HSH155 (0.999); PRP40 (0.999); SNU66 (0.999); CEF1 (0.999); LUC7 (0.999); SMB1 (0.999); LEA1 (0.999); YHC1 (0.999); SNP1 (0.999); SNU71 (0.999); NAM8 (0.999); SNU56 (0.999); SMX3 (0.998); MUD1 (0.998); SMD1 (0.997); PRP42 (0.997); RSE1 (0.997); SMD3 (0.997); CUS1 (0.996); PRP21 (0.996)
Homologues (species, bitscore): PRPF39 (Homo sapiens, 102.1); Prpf39 (Mus musculus, 99.4); si:ch211-114c17.1 (Danio rerio, 99.8); prpf39.2 (Xenopus tropicalis, 99.4); CG1646 (Drosophila melanogaster, 83.2); F25B4.5 (Caenorhabditis elegans, 76.3); PRP39-2 (Arabidopsis thaliana, 96.3)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:174895-176784:+ | gene-YML046W_AKU4011 | rna-NM_001182403.1_AKU4011 | cds-NP_013667.1_AKU4011 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000201.1:299074-300963:- | gene-YML046W_BG1 | rna-NM_001182403.1_BG1 | cds-NP_013667.1_BG1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:180963-182852:+ | gene-YML046W_Bruggeman | rna-NM_001182403.1_Bruggeman | cds-NP_013667.1_Bruggeman | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:184509-186398:+ | gene-YML046W_CAT1 | rna-NM_001182403.1_CAT1 | cds-NP_013667.1_CAT1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:175656-177545:+ | gene-YML046W_CBS1585 | rna-NM_001182403.1_CBS1585 | cds-NP_013667.1_CBS1585 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:180780-182669:+ | gene-YML046W_CBS436 | rna-NM_001182403.1_CBS436 | cds-NP_013667.1_CBS436 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:289455-291344:+ | gene-YML046W_CBS6412 | rna-NM_001182403.1_CBS6412 | cds-NP_013667.1_CBS6412 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:174968-176857:+ | gene-YML046W_CBS6413 | rna-NM_001182403.1_CBS6413 | cds-NP_013667.1_CBS6413 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:187676-189565:+ | gene-YML046W_CENPK1137D | rna-NM_001182403.1_CENPK1137D | cds-NP_013667.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005483.1:175721-177610:+ | gene-YML046W_EthanolRed | rna-NM_001182403.1_EthanolRed | cds-NP_013667.1_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:176252-178141:+ | gene-YML046W_FaliES1 | rna-NM_001182403.1_FaliES1 | cds-NP_013667.1_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000172.1:650-2539:- | gene-YML046W_JAY291 | rna-NM_001182403.1_JAY291 | cds-NP_013667.1_JAY291 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:179491-181380:+ | gene-YML046W_MUCL30387 | rna-NM_001182403.1_MUCL30387 | cds-NP_013667.1_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:183576-185465:+ | gene-YML046W_MUCL30388 | rna-NM_001182403.1_MUCL30388 | cds-NP_013667.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:176002-177891:+ | gene-YML046W_MUCL39482 | rna-NM_001182403.1_MUCL39482 | cds-NP_013667.1_MUCL39482 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:180794-182683:+ | gene-YML046W_MUCL42920 | rna-NM_001182403.1_MUCL42920 | cds-NP_013667.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:181428-183317:+ | gene-YML046W_NCIM3186 | rna-NM_001182403.1_NCIM3186 | cds-NP_013667.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:175964-177853:+ | gene-YML046W_NCYC1407 | rna-NM_001182403.1_NCYC1407 | cds-NP_013667.1_NCYC1407 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:181465-183354:+ | gene-YML046W_PE2H3 | rna-NM_001182403.1_PE2H3 | cds-NP_013667.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:181631-183520:+ | gene-YML046W_PE2H4 | rna-NM_001182403.1_PE2H4 | cds-NP_013667.1_PE2H4 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:181474-183363:+ | gene-YML046W_S288C | rna-NM_001182403.1_S288C | cds-NP_013667.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000041.1:757-2646:- | gene-YML046W_SA1 | rna-NM_001182403.1_SA1 | cds-NP_013667.1_SA1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:175768-177657:+ | gene-YML046W_ThermosaccDry | rna-NM_001182403.1_ThermosaccDry | cds-NP_013667.1_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:179256-181145:+ | gene-YML046W_VR1 | rna-NM_001182403.1_VR1 | cds-NP_013667.1_VR1 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000027.1:154841-156730:+ | gene-YML046W_ZTW1 | rna-NM_001182403.1_ZTW1 | cds-NP_013667.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:186416-188305:+ | gene-YML046W_Sparadoxus | rna-NM_001182403.1_Sparadoxus | cds-NP_013667.1_Sparadoxus | 89.4 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |