Gene name: PRP38
Reference locus (S288C): YGR075C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor 38; Unique component of the U4/U6.U5 tri-snRNP particle; tri-snRNP is required for conformational changes which result in the catalytic activation of the spliceosome; dispensable for spliceosome assembly; Belongs to the PRP38 family
Top 10 interactors (score): SPP381 (0.999); SNU66 (0.999); BRR2 (0.999); SMD3 (0.998); SNU23 (0.998); PRP3 (0.996); PRP4 (0.995); PRP6 (0.993); PRP8 (0.991); SMB1 (0.991); PRP31 (0.99); SMD1 (0.989); LSM2 (0.988); SME1 (0.987); LSM3 (0.986); SNU114 (0.982); SMD2 (0.98); LSM8 (0.98); SMX2 (0.98); SMX3 (0.98)
Homologues (species, bitscore): Unknown
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:619838-620566:- | gene-YGR075C_AKU4011 | rna-NM_001181204.3_AKU4011 | cds-NP_011589.3_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000173.1:56107-56835:- | gene-YGR075C_BG1 | rna-NM_001181204.3_BG1 | cds-NP_011589.3_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:622114-622842:- | gene-YGR075C_Bruggeman | rna-NM_001181204.3_Bruggeman | cds-NP_011589.3_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:620546-621274:- | gene-YGR075C_CAT1 | rna-NM_001181204.3_CAT1 | cds-NP_011589.3_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:621132-621860:- | gene-YGR075C_CBS1585 | rna-NM_001181204.3_CBS1585 | cds-NP_011589.3_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:622444-623172:- | gene-YGR075C_CBS436 | rna-NM_001181204.3_CBS436 | cds-NP_011589.3_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:613957-614685:- | gene-YGR075C_CBS6412 | rna-NM_001181204.3_CBS6412 | cds-NP_011589.3_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:617840-618568:- | gene-YGR075C_CBS6413 | rna-NM_001181204.3_CBS6413 | cds-NP_011589.3_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:635853-636581:- | gene-YGR075C_CENPK1137D | rna-NM_001181204.3_CENPK1137D | cds-NP_011589.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:608091-608819:- | gene-YGR075C_EthanolRed | rna-NM_001181204.3_EthanolRed | cds-NP_011589.3_EthanolRed | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:611558-612286:- | gene-YGR075C_FaliES1 | rna-NM_001181204.3_FaliES1 | cds-NP_011589.3_FaliES1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000435.1:62494-63222:- | gene-YGR075C_JAY291 | rna-NM_001181204.3_JAY291 | cds-NP_011589.3_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:618774-619502:- | gene-YGR075C_MUCL30387 | rna-NM_001181204.3_MUCL30387 | cds-NP_011589.3_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:622144-622872:- | gene-YGR075C_MUCL30388 | rna-NM_001181204.3_MUCL30388 | cds-NP_011589.3_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:616983-617711:- | gene-YGR075C_MUCL39482 | rna-NM_001181204.3_MUCL39482 | cds-NP_011589.3_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:626775-627503:- | gene-YGR075C_MUCL42920 | rna-NM_001181204.3_MUCL42920 | cds-NP_011589.3_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:636147-636875:- | gene-YGR075C_NCIM3186 | rna-NM_001181204.3_NCIM3186 | cds-NP_011589.3_NCIM3186 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:611164-611892:- | gene-YGR075C_NCYC1407 | rna-NM_001181204.3_NCYC1407 | cds-NP_011589.3_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:614399-615127:- | gene-YGR075C_PE2H3 | rna-NM_001181204.3_PE2H3 | cds-NP_011589.3_PE2H3 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:619523-620251:- | gene-YGR075C_PE2H4 | rna-NM_001181204.3_PE2H4 | cds-NP_011589.3_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:636147-636875:- | gene-YGR075C_S288C | rna-NM_001181204.3_S288C | cds-NP_011589.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000015.1:62689-63417:- | gene-YGR075C_SA1 | rna-NM_001181204.3_SA1 | cds-NP_011589.3_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:630884-631612:- | gene-YGR075C_ThermosaccDry | rna-NM_001181204.3_ThermosaccDry | cds-NP_011589.3_ThermosaccDry | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:727844-728572:- | gene-YGR075C_VR1 | rna-NM_001181204.3_VR1 | cds-NP_011589.3_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000015.1:86354-87082:- | gene-YGR075C_ZTW1 | rna-NM_001181204.3_ZTW1 | cds-NP_011589.3_ZTW1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:621422-622168:- | gene-YGR075C_Sparadoxus | rna-NM_001181204.3_Sparadoxus | cds-NP_011589.3_Sparadoxus | 86.6 | 99.5 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |