Gene name: PRP3
Reference locus (S288C): YDR473C
Gene biotype: protein_coding
Description: U4/U6 small nuclear ribonucleoprotein PRP3; Splicing factor; component of the U4/U6-U5 snRNP complex
Top 10 interactors (score): SNU66 (0.999); BRR2 (0.999); DIB1 (0.999); PRP6 (0.999); SMD3 (0.999); SMB1 (0.999); SNU23 (0.999); LSM2 (0.999); LSM8 (0.999); SMX3 (0.999); SMX2 (0.999); SNU114 (0.999); PRP8 (0.999); PRP4 (0.999); SME1 (0.999); PRP31 (0.999); LSM3 (0.999); SNU13 (0.999); LSM4 (0.999); LSM6 (0.999)
Homologues (species, bitscore): PRPF3 (Homo sapiens, 133.3); Prpf3 (Mus musculus, 132.1); Prpf3 (Danio rerio, 129.0); prpf3 (Xenopus tropicalis, 134.8); Prp3 (Drosophila melanogaster, 112.8); prp-3 (Caenorhabditis elegans, 127.5); AT1G28060 (Arabidopsis thaliana, 98.6)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:1344372-1345781:- | gene-YDR473C_AKU4011 | rna-NM_001180781.3_AKU4011 | cds-NP_010761.3_AKU4011 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000039.1:219471-220880:- | gene-YDR473C_BG1 | rna-NM_001180781.3_BG1 | cds-NP_010761.3_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:1375778-1377187:- | gene-YDR473C_Bruggeman | rna-NM_001180781.3_Bruggeman | cds-NP_010761.3_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:1352921-1354330:- | gene-YDR473C_CAT1 | rna-NM_001180781.3_CAT1 | cds-NP_010761.3_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:1338668-1340077:- | gene-YDR473C_CBS1585 | rna-NM_001180781.3_CBS1585 | cds-NP_010761.3_CBS1585 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:1358029-1359438:- | gene-YDR473C_CBS436 | rna-NM_001180781.3_CBS436 | cds-NP_010761.3_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:1334295-1335704:- | gene-YDR473C_CBS6412 | rna-NM_001180781.3_CBS6412 | cds-NP_010761.3_CBS6412 | 99.5 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:1357306-1358715:- | gene-YDR473C_CBS6413 | rna-NM_001180781.3_CBS6413 | cds-NP_010761.3_CBS6413 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:1403141-1404550:- | gene-YDR473C_CENPK1137D | rna-NM_001180781.3_CENPK1137D | cds-NP_010761.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:1347709-1349118:- | gene-YDR473C_EthanolRed | rna-NM_001180781.3_EthanolRed | cds-NP_010761.3_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:1351262-1352671:- | gene-YDR473C_FaliES1 | rna-NM_001180781.3_FaliES1 | cds-NP_010761.3_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000026.1:49513-50922:- | gene-YDR473C_JAY291 | rna-NM_001180781.3_JAY291 | cds-NP_010761.3_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:1358270-1359679:- | gene-YDR473C_MUCL30387 | rna-NM_001180781.3_MUCL30387 | cds-NP_010761.3_MUCL30387 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:1340292-1341701:- | gene-YDR473C_MUCL30388 | rna-NM_001180781.3_MUCL30388 | cds-NP_010761.3_MUCL30388 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:1330152-1331561:- | gene-YDR473C_MUCL39482 | rna-NM_001180781.3_MUCL39482 | cds-NP_010761.3_MUCL39482 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:1272945-1274354:- | gene-YDR473C_MUCL42920 | rna-NM_001180781.3_MUCL42920 | cds-NP_010761.3_MUCL42920 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:1404368-1405777:- | gene-YDR473C_NCIM3186 | rna-NM_001180781.3_NCIM3186 | cds-NP_010761.3_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:1343925-1345334:- | gene-YDR473C_NCYC1407 | rna-NM_001180781.3_NCYC1407 | cds-NP_010761.3_NCYC1407 | 99.5 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:1354764-1356173:- | gene-YDR473C_PE2H3 | rna-NM_001180781.3_PE2H3 | cds-NP_010761.3_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:1360338-1361747:- | gene-YDR473C_PE2H4 | rna-NM_001180781.3_PE2H4 | cds-NP_010761.3_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:1404445-1405854:- | gene-YDR473C_S288C | rna-NM_001180781.3_S288C | cds-NP_010761.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000004.1:211307-212716:+ | gene-YDR473C_SA1 | rna-NM_001180781.3_SA1 | cds-NP_010761.3_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:1355484-1356893:- | gene-YDR473C_ThermosaccDry | rna-NM_001180781.3_ThermosaccDry | cds-NP_010761.3_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:1371207-1372616:- | gene-YDR473C_VR1 | rna-NM_001180781.3_VR1 | cds-NP_010761.3_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000008.1:398155-399564:- | gene-YDR473C_ZTW1 | rna-NM_001180781.3_ZTW1 | cds-NP_010761.3_ZTW1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:1358546-1359952:- | gene-YDR473C_Sparadoxus | rna-NM_001180781.3_Sparadoxus | cds-NP_010761.3_Sparadoxus | 87.7 | 99.6 | Verified | 1 | 1 | 1 | False | True | False | False | False |