Gene name: PRP28
Reference locus (S288C): YDR243C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing ATP-dependent RNA helicase PRP28; RNA binding protein; involved in RNA isomerization at the 5' splice site and for exchange of U6 for U1 snRNA at the 5' splice site; similar to the RNA helicases of the DEAD-box family
Top 10 interactors (score): PRP8 (0.999); BRR2 (0.999); SMX3 (0.999); SMX2 (0.999); SNU114 (0.999); SMD2 (0.999); DIB1 (0.999); LIN1 (0.999); PRP16 (0.999); SME1 (0.999); PRP31 (0.998); PRP6 (0.998); SNU66 (0.998); YHC1 (0.998); SMD3 (0.997); SMD1 (0.997); PRP3 (0.99); SMB1 (0.99); CEF1 (0.99); AAR2 (0.99)
Homologues (species, bitscore): DDX23 (Homo sapiens, 364.0); Ddx23 (Mus musculus, 364.0); ddx23 (Danio rerio, 363.6); ddx23 (Xenopus tropicalis, 351.7); CG10333 (Drosophila melanogaster, 357.5); ddx-23 (Caenorhabditis elegans, 348.2); AT2G33730 (Arabidopsis thaliana, 334.7)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005298.1:904848-906614:- | gene-YDR243C_AKU4011 | rna-NM_001180551.3_AKU4011 | cds-NP_010529.3_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000080.1:218662-220428:+ | gene-YDR243C_BG1 | rna-NM_001180551.3_BG1 | cds-NP_010529.3_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005506.1:937174-938940:- | gene-YDR243C_Bruggeman | rna-NM_001180551.3_Bruggeman | cds-NP_010529.3_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005522.1:924460-926226:- | gene-YDR243C_CAT1 | rna-NM_001180551.3_CAT1 | cds-NP_010529.3_CAT1 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005362.1:895197-896963:- | gene-YDR243C_CBS1585 | rna-NM_001180551.3_CBS1585 | cds-NP_010529.3_CBS1585 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005346.1:924754-926520:- | gene-YDR243C_CBS436 | rna-NM_001180551.3_CBS436 | cds-NP_010529.3_CBS436 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005330.1:891957-893723:- | gene-YDR243C_CBS6412 | rna-NM_001180551.3_CBS6412 | cds-NP_010529.3_CBS6412 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005314.1:923051-924817:- | gene-YDR243C_CBS6413 | rna-NM_001180551.3_CBS6413 | cds-NP_010529.3_CBS6413 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001525.1:947447-949213:- | gene-YDR243C_CENPK1137D | rna-NM_001180551.3_CENPK1137D | cds-NP_010529.3_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005474.1:905580-907346:- | gene-YDR243C_EthanolRed | rna-NM_001180551.3_EthanolRed | cds-NP_010529.3_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005538.1:913782-915548:- | gene-YDR243C_FaliES1 | rna-NM_001180551.3_FaliES1 | cds-NP_010529.3_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000261.1:2251-4017:- | gene-YDR243C_JAY291 | rna-NM_001180551.3_JAY291 | cds-NP_010529.3_JAY291 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005410.1:923072-924838:- | gene-YDR243C_MUCL30387 | rna-NM_001180551.3_MUCL30387 | cds-NP_010529.3_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005442.1:911102-912868:- | gene-YDR243C_MUCL30388 | rna-NM_001180551.3_MUCL30388 | cds-NP_010529.3_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005282.1:896602-898368:- | gene-YDR243C_MUCL39482 | rna-NM_001180551.3_MUCL39482 | cds-NP_010529.3_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005426.1:836368-838134:- | gene-YDR243C_MUCL42920 | rna-NM_001180551.3_MUCL42920 | cds-NP_010529.3_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011813.1:948441-950207:- | gene-YDR243C_NCIM3186 | rna-NM_001180551.3_NCIM3186 | cds-NP_010529.3_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005266.1:900270-902036:- | gene-YDR243C_NCYC1407 | rna-NM_001180551.3_NCYC1407 | cds-NP_010529.3_NCYC1407 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994143.1:916527-918293:- | gene-YDR243C_PE2H3 | rna-NM_001180551.3_PE2H3 | cds-NP_010529.3_PE2H3 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999875.1:921804-923570:- | gene-YDR243C_PE2H4 | rna-NM_001180551.3_PE2H4 | cds-NP_010529.3_PE2H4 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001136.10:948518-950284:- | gene-YDR243C_S288C | rna-NM_001180551.3_S288C | cds-NP_010529.3_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000013.1:154364-156130:- | gene-YDR243C_SA1 | rna-NM_001180551.3_SA1 | cds-NP_010529.3_SA1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005490.1:911936-913702:- | gene-YDR243C_ThermosaccDry | rna-NM_001180551.3_ThermosaccDry | cds-NP_010529.3_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005458.1:927127-928893:- | gene-YDR243C_VR1 | rna-NM_001180551.3_VR1 | cds-NP_010529.3_VR1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000007.1:174618-176384:- | gene-YDR243C_ZTW1 | rna-NM_001180551.3_ZTW1 | cds-NP_010529.3_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047490.1:917274-919040:- | gene-YDR243C_Sparadoxus | rna-NM_001180551.3_Sparadoxus | cds-NP_010529.3_Sparadoxus | 86.2 | 99.7 | Verified | 1 | 1 | 1 | False | True | False | False | False |