Gene name: PRP24
Reference locus (S288C): YMR268C
Gene biotype: protein_coding
Description: U4/U6 snRNA-associated-splicing factor PRP24; Splicing factor that reanneals snRNPs during spliceosome recycling; reanneals U4 and U6 snRNPs
Top 10 interactors (score): LSM6 (0.999); LSM8 (0.999); LSM2 (0.999); LSM4 (0.999); LSM7 (0.999); LSM3 (0.999); LSM5 (0.999); PRP31 (0.995); PRP3 (0.994); PRP4 (0.989); BRR2 (0.967); PRP28 (0.943); SNU114 (0.94); PRP6 (0.914); SNU66 (0.9); UBP12 (0.888); PRP21 (0.863); CUS2 (0.822); YHC1 (0.82); CEF1 (0.816)
Homologues (species, bitscore): PABPC4L (Homo sapiens, 71.6); Pabpc4 (Mus musculus, 64.3); pabpc4 (Danio rerio, 67.4); pabpc4 (Xenopus tropicalis, 59.3); Spx (Drosophila melanogaster, 57.8); sap-49 (Caenorhabditis elegans, 62.4); PAB4 (Arabidopsis thaliana, 72.8)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005307.1:842346-843680:- | gene-YMR268C_AKU4011 | rna-NM_001182775.1_AKU4011 | cds-NP_013995.1_AKU4011 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000069.1:110719-112053:+ | gene-YMR268C_BG1 | rna-NM_001182775.1_BG1 | cds-NP_013995.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005515.1:787555-788889:- | gene-YMR268C_Bruggeman | rna-NM_001182775.1_Bruggeman | cds-NP_013995.1_Bruggeman | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005531.1:790578-791912:- | gene-YMR268C_CAT1 | rna-NM_001182775.1_CAT1 | cds-NP_013995.1_CAT1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005371.1:774596-775930:- | gene-YMR268C_CBS1585 | rna-NM_001182775.1_CBS1585 | cds-NP_013995.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005355.1:796524-797858:- | gene-YMR268C_CBS436 | rna-NM_001182775.1_CBS436 | cds-NP_013995.1_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005339.1:886151-887485:- | gene-YMR268C_CBS6412 | rna-NM_001182775.1_CBS6412 | cds-NP_013995.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005323.1:773698-775032:- | gene-YMR268C_CBS6413 | rna-NM_001182775.1_CBS6413 | cds-NP_013995.1_CBS6413 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001534.1:797299-798633:- | gene-YMR268C_CENPK1137D | rna-NM_001182775.1_CENPK1137D | cds-NP_013995.1_CENPK1137D | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005486.1:835034-836368:- | gene-YMR268C_EthanolRed | rna-NM_001182775.1_EthanolRed | cds-NP_013995.1_EthanolRed | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005547.1:781061-782395:- | gene-YMR268C_FaliES1 | rna-NM_001182775.1_FaliES1 | cds-NP_013995.1_FaliES1 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000141.1:4141-5475:+ | gene-YMR268C_JAY291 | rna-NM_001182775.1_JAY291 | cds-NP_013995.1_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005419.1:781404-782738:- | gene-YMR268C_MUCL30387 | rna-NM_001182775.1_MUCL30387 | cds-NP_013995.1_MUCL30387 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005451.1:790772-792106:- | gene-YMR268C_MUCL30388 | rna-NM_001182775.1_MUCL30388 | cds-NP_013995.1_MUCL30388 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005291.1:775684-777018:- | gene-YMR268C_MUCL39482 | rna-NM_001182775.1_MUCL39482 | cds-NP_013995.1_MUCL39482 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005435.1:783732-785066:- | gene-YMR268C_MUCL42920 | rna-NM_001182775.1_MUCL42920 | cds-NP_013995.1_MUCL42920 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011822.1:802842-804176:- | gene-YMR268C_NCIM3186 | rna-NM_001182775.1_NCIM3186 | cds-NP_013995.1_NCIM3186 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005275.1:775308-776642:- | gene-YMR268C_NCYC1407 | rna-NM_001182775.1_NCYC1407 | cds-NP_013995.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994152.1:785297-786631:- | gene-YMR268C_PE2H3 | rna-NM_001182775.1_PE2H3 | cds-NP_013995.1_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999884.1:786366-787700:- | gene-YMR268C_PE2H4 | rna-NM_001182775.1_PE2H4 | cds-NP_013995.1_PE2H4 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001145.3:802888-804222:- | gene-YMR268C_S288C | rna-NM_001182775.1_S288C | cds-NP_013995.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000002.1:4213-5547:+ | gene-YMR268C_SA1 | rna-NM_001182775.1_SA1 | cds-NP_013995.1_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005499.1:777230-778564:- | gene-YMR268C_ThermosaccDry | rna-NM_001182775.1_ThermosaccDry | cds-NP_013995.1_ThermosaccDry | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005467.1:789834-791168:- | gene-YMR268C_VR1 | rna-NM_001182775.1_VR1 | cds-NP_013995.1_VR1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000028.1:192430-193764:- | gene-YMR268C_ZTW1 | rna-NM_001182775.1_ZTW1 | cds-NP_013995.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047499.1:795670-797004:- | gene-YMR268C_Sparadoxus | rna-NM_001182775.1_Sparadoxus | cds-NP_013995.1_Sparadoxus | 86.8 | 100.0 | Verified | 1 | 1 | 0 | False | False | False | True | False |