Gene name: PRP21
Reference locus (S288C): YJL203W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor PRP21; Subunit of the SF3a splicing factor complex; required for spliceosome assembly
Top 10 interactors (score): SME1 (0.999); YSF3 (0.999); RDS3 (0.999); PRP11 (0.999); SMD1 (0.999); MSL1 (0.999); SYF1 (0.999); SMX2 (0.999); RSE1 (0.999); PRP19 (0.999); PRP6 (0.999); CEF1 (0.999); SMD3 (0.999); SMB1 (0.999); HSH155 (0.999); HSH49 (0.999); PRP9 (0.999); CUS1 (0.999); BRR2 (0.999); LEA1 (0.999)
Homologues (species, bitscore): SF3A1 (Homo sapiens, 65.5); Sf3a1 (Mus musculus, 65.9); sf3a1 (Danio rerio, 68.9); LOC734097 (Xenopus tropicalis, 63.2); CG16941 (Drosophila melanogaster, 62.4); prp-21 (Caenorhabditis elegans, 64.7); AT1G14640 (Arabidopsis thaliana, 63.9)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005304.1:41743-42585:+ | gene-YJL203W_AKU4011 | rna-NM_001181636.1_AKU4011 | cds-NP_012332.1_AKU4011 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000181.1:19009-19851:+ | gene-YJL203W_BG1 | rna-NM_001181636.1_BG1 | cds-NP_012332.1_BG1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005512.1:53543-54385:+ | gene-YJL203W_Bruggeman | rna-NM_001181636.1_Bruggeman | cds-NP_012332.1_Bruggeman | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005528.1:56288-57130:+ | gene-YJL203W_CAT1 | rna-NM_001181636.1_CAT1 | cds-NP_012332.1_CAT1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005368.1:47373-48215:+ | gene-YJL203W_CBS1585 | rna-NM_001181636.1_CBS1585 | cds-NP_012332.1_CBS1585 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005352.1:72112-72954:+ | gene-YJL203W_CBS436 | rna-NM_001181636.1_CBS436 | cds-NP_012332.1_CBS436 | 99.1 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005336.1:43856-44698:+ | gene-YJL203W_CBS6412 | rna-NM_001181636.1_CBS6412 | cds-NP_012332.1_CBS6412 | 99.0 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005320.1:44852-45694:+ | gene-YJL203W_CBS6413 | rna-NM_001181636.1_CBS6413 | cds-NP_012332.1_CBS6413 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001531.1:35802-36644:+ | gene-YJL203W_CENPK1137D | rna-NM_001181636.1_CENPK1137D | cds-NP_012332.1_CENPK1137D | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005480.1:46040-46882:+ | gene-YJL203W_EthanolRed | rna-NM_001181636.1_EthanolRed | cds-NP_012332.1_EthanolRed | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005544.1:51317-52159:+ | gene-YJL203W_FaliES1 | rna-NM_001181636.1_FaliES1 | cds-NP_012332.1_FaliES1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000301.1:42463-43305:+ | gene-YJL203W_JAY291 | rna-NM_001181636.1_JAY291 | cds-NP_012332.1_JAY291 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005416.1:55276-56118:+ | gene-YJL203W_MUCL30387 | rna-NM_001181636.1_MUCL30387 | cds-NP_012332.1_MUCL30387 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005448.1:51431-52273:+ | gene-YJL203W_MUCL30388 | rna-NM_001181636.1_MUCL30388 | cds-NP_012332.1_MUCL30388 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005288.1:46114-46956:+ | gene-YJL203W_MUCL39482 | rna-NM_001181636.1_MUCL39482 | cds-NP_012332.1_MUCL39482 | 98.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005432.1:50717-51559:+ | gene-YJL203W_MUCL42920 | rna-NM_001181636.1_MUCL42920 | cds-NP_012332.1_MUCL42920 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011819.1:53320-54162:+ | gene-YJL203W_NCIM3186 | rna-NM_001181636.1_NCIM3186 | cds-NP_012332.1_NCIM3186 | 99.0 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005272.1:44729-45571:+ | gene-YJL203W_NCYC1407 | rna-NM_001181636.1_NCYC1407 | cds-NP_012332.1_NCYC1407 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994149.1:57409-58251:+ | gene-YJL203W_PE2H3 | rna-NM_001181636.1_PE2H3 | cds-NP_012332.1_PE2H3 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999881.1:51297-52139:+ | gene-YJL203W_PE2H4 | rna-NM_001181636.1_PE2H4 | cds-NP_012332.1_PE2H4 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001142.9:53341-54183:+ | gene-YJL203W_S288C | rna-NM_001181636.1_S288C | cds-NP_012332.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000022.1:99711-100553:- | gene-YJL203W_SA1 | rna-NM_001181636.1_SA1 | cds-NP_012332.1_SA1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005496.1:44512-45354:+ | gene-YJL203W_ThermosaccDry | rna-NM_001181636.1_ThermosaccDry | cds-NP_012332.1_ThermosaccDry | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005464.1:51367-52209:+ | gene-YJL203W_VR1 | rna-NM_001181636.1_VR1 | cds-NP_012332.1_VR1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000021.1:32091-32933:+ | gene-YJL203W_ZTW1 | rna-NM_001181636.1_ZTW1 | cds-NP_012332.1_ZTW1 | 99.1 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047496.1:56249-57091:+ | gene-YJL203W_Sparadoxus | rna-NM_001181636.1_Sparadoxus | cds-NP_012332.1_Sparadoxus | 86.5 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |