Gene name: PRP2
Reference locus (S288C): YNR011C
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor ATP-dependent RNA helicase-like protein PRP2; RNA-dependent DExD/H-box ATPase; required for activation of spliceosome before first transesterification step in RNA splicing; implicated in rearranging and proofreading snRNA structure in catalytic activation of spliceosome; ortholog of human protein DHX16
Top 10 interactors (score): PRP8 (0.999); CUS1 (0.999); BRR2 (0.999); SNU114 (0.999); CEF1 (0.999); CDC40 (0.999); SYF1 (0.999); PRP19 (0.998); HSH155 (0.995); CWC22 (0.995); PRP11 (0.994); IST3 (0.994); CLF1 (0.994); RSE1 (0.994); BUD13 (0.993); CWC24 (0.989); CWC27 (0.988); PRP45 (0.987); ECM2 (0.986); PML1 (0.986)
Homologues (species, bitscore): DHX16 (Homo sapiens, 644.8); Dhx16 (Mus musculus, 649.4); dhx16 (Danio rerio, 648.7); dhx8 (Xenopus tropicalis, 597.8); l(2)37Cb (Drosophila melanogaster, 652.9); mog-4 (Caenorhabditis elegans, 676.0); MEE29 (Arabidopsis thaliana, 639.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005308.1:627904-630534:- | gene-YNR011C_AKU4011 | rna-NM_001183188.1_AKU4011 | cds-NP_014408.1_AKU4011 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000155.1:535758-538388:- | gene-YNR011C_BG1 | rna-NM_001183188.1_BG1 | cds-NP_014408.1_BG1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005516.1:645395-648025:- | gene-YNR011C_Bruggeman | rna-NM_001183188.1_Bruggeman | cds-NP_014408.1_Bruggeman | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005532.1:679621-682251:- | gene-YNR011C_CAT1 | rna-NM_001183188.1_CAT1 | cds-NP_014408.1_CAT1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005372.1:633700-636330:- | gene-YNR011C_CBS1585 | rna-NM_001183188.1_CBS1585 | cds-NP_014408.1_CBS1585 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005356.1:695392-698022:- | gene-YNR011C_CBS436 | rna-NM_001183188.1_CBS436 | cds-NP_014408.1_CBS436 | 99.9 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005340.1:623266-625896:- | gene-YNR011C_CBS6412 | rna-NM_001183188.1_CBS6412 | cds-NP_014408.1_CBS6412 | 99.6 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005324.1:624594-627224:- | gene-YNR011C_CBS6413 | rna-NM_001183188.1_CBS6413 | cds-NP_014408.1_CBS6413 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001535.1:638006-640636:- | gene-YNR011C_CENPK1137D | rna-NM_001183188.1_CENPK1137D | cds-NP_014408.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005484.1:629820-632450:- | gene-YNR011C_EthanolRed | rna-NM_001183188.1_EthanolRed | cds-NP_014408.1_EthanolRed | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005548.1:620838-623468:- | gene-YNR011C_FaliES1 | rna-NM_001183188.1_FaliES1 | cds-NP_014408.1_FaliES1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000037.1:79271-81901:+ | gene-YNR011C_JAY291 | rna-NM_001183188.1_JAY291 | cds-NP_014408.1_JAY291 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005420.1:643149-645779:- | gene-YNR011C_MUCL30387 | rna-NM_001183188.1_MUCL30387 | cds-NP_014408.1_MUCL30387 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005452.1:683981-686611:- | gene-YNR011C_MUCL30388 | rna-NM_001183188.1_MUCL30388 | cds-NP_014408.1_MUCL30388 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005292.1:625206-627836:- | gene-YNR011C_MUCL39482 | rna-NM_001183188.1_MUCL39482 | cds-NP_014408.1_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005436.1:629390-632020:- | gene-YNR011C_MUCL42920 | rna-NM_001183188.1_MUCL42920 | cds-NP_014408.1_MUCL42920 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011823.1:644289-646919:- | gene-YNR011C_NCIM3186 | rna-NM_001183188.1_NCIM3186 | cds-NP_014408.1_NCIM3186 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005276.1:627712-630342:- | gene-YNR011C_NCYC1407 | rna-NM_001183188.1_NCYC1407 | cds-NP_014408.1_NCYC1407 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994153.1:628799-631429:- | gene-YNR011C_PE2H3 | rna-NM_001183188.1_PE2H3 | cds-NP_014408.1_PE2H3 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999885.1:630117-632747:- | gene-YNR011C_PE2H4 | rna-NM_001183188.1_PE2H4 | cds-NP_014408.1_PE2H4 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001146.8:644320-646950:- | gene-YNR011C_S288C | rna-NM_001183188.1_S288C | cds-NP_014408.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000068.1:42024-44654:- | gene-YNR011C_SA1 | rna-NM_001183188.1_SA1 | cds-NP_014408.1_SA1 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005500.1:621178-623808:- | gene-YNR011C_ThermosaccDry | rna-NM_001183188.1_ThermosaccDry | cds-NP_014408.1_ThermosaccDry | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005468.1:663144-665774:- | gene-YNR011C_VR1 | rna-NM_001183188.1_VR1 | cds-NP_014408.1_VR1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000030.1:530086-532716:- | gene-YNR011C_ZTW1 | rna-NM_001183188.1_ZTW1 | cds-NP_014408.1_ZTW1 | 99.9 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047500.1:635283-637913:- | gene-YNR011C_Sparadoxus | rna-NM_001183188.1_Sparadoxus | cds-NP_014408.1_Sparadoxus | 89.5 | 99.9 | Verified | 1 | 1 | 1 | False | True | False | False | False |