Gene name: PRP19
Reference locus (S288C): YLL036C
Gene biotype: protein_coding
Description: Pre-mRNA-processing factor 19; Splicing factor associated with the spliceosome; contains a U-box, a motif found in a class of ubiquitin ligases, and a WD40 domain; relocalizes to the cytosol in response to hypoxia; Belongs to the WD repeat PRP19 family
Top 10 interactors (score): CWC25 (0.999); CWC23 (0.999); SMX3 (0.999); SPP2 (0.999); SNU66 (0.999); SMD2 (0.999); PRP9 (0.999); CDC40 (0.999); BRR2 (0.999); PRP8 (0.999); CUS1 (0.999); SNU114 (0.999); CWC2 (0.999); SMX2 (0.999); RSE1 (0.999); PRP43 (0.999); SYF2 (0.999); CWC15 (0.999); CWC24 (0.999); LEA1 (0.999)
Homologues (species, bitscore): PRPF19 (Homo sapiens, 102.4); Prpf19 (Mus musculus, 90.9); prp19 (Danio rerio, 105.9); prpf19 (Xenopus tropicalis, 100.9); Prp19 (Drosophila melanogaster, 96.7); prp-19 (Caenorhabditis elegans, 93.6); MAC3B (Arabidopsis thaliana, 114.4)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005306.1:53903-55414:- | gene-YLL036C_AKU4011 | rna-NM_001181856.1_AKU4011 | cds-NP_013064.1_AKU4011 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000212.1:17844-19355:- | gene-YLL036C_BG1 | rna-NM_001181856.1_BG1 | cds-NP_013064.1_BG1 | 99.7 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005514.1:64153-65664:- | gene-YLL036C_Bruggeman | rna-NM_001181856.1_Bruggeman | cds-NP_013064.1_Bruggeman | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005530.1:64781-66292:- | gene-YLL036C_CAT1 | rna-NM_001181856.1_CAT1 | cds-NP_013064.1_CAT1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005370.1:61603-63114:- | gene-YLL036C_CBS1585 | rna-NM_001181856.1_CBS1585 | cds-NP_013064.1_CBS1585 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005354.1:51802-53313:- | gene-YLL036C_CBS436 | rna-NM_001181856.1_CBS436 | cds-NP_013064.1_CBS436 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005338.1:61473-62984:- | gene-YLL036C_CBS6412 | rna-NM_001181856.1_CBS6412 | cds-NP_013064.1_CBS6412 | 99.2 | 100.0 | Mismatch | 1 | 1 | 1 | False | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005322.1:61599-63110:- | gene-YLL036C_CBS6413 | rna-NM_001181856.1_CBS6413 | cds-NP_013064.1_CBS6413 | 99.3 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001533.1:51752-53263:- | gene-YLL036C_CENPK1137D | rna-NM_001181856.1_CENPK1137D | cds-NP_013064.1_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005482.1:54300-55811:- | gene-YLL036C_EthanolRed | rna-NM_001181856.1_EthanolRed | cds-NP_013064.1_EthanolRed | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005546.1:53613-55124:- | gene-YLL036C_FaliES1 | rna-NM_001181856.1_FaliES1 | cds-NP_013064.1_FaliES1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000118.1:23879-25390:+ | gene-YLL036C_JAY291 | rna-NM_001181856.1_JAY291 | cds-NP_013064.1_JAY291 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005418.1:61564-63075:- | gene-YLL036C_MUCL30387 | rna-NM_001181856.1_MUCL30387 | cds-NP_013064.1_MUCL30387 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005450.1:66289-67800:- | gene-YLL036C_MUCL30388 | rna-NM_001181856.1_MUCL30388 | cds-NP_013064.1_MUCL30388 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005290.1:61812-63323:- | gene-YLL036C_MUCL39482 | rna-NM_001181856.1_MUCL39482 | cds-NP_013064.1_MUCL39482 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005434.1:61661-63172:- | gene-YLL036C_MUCL42920 | rna-NM_001181856.1_MUCL42920 | cds-NP_013064.1_MUCL42920 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011821.1:66719-68230:- | gene-YLL036C_NCIM3186 | rna-NM_001181856.1_NCIM3186 | cds-NP_013064.1_NCIM3186 | 98.9 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005274.1:53678-55189:- | gene-YLL036C_NCYC1407 | rna-NM_001181856.1_NCYC1407 | cds-NP_013064.1_NCYC1407 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994151.1:60364-61875:- | gene-YLL036C_PE2H3 | rna-NM_001181856.1_PE2H3 | cds-NP_013064.1_PE2H3 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999883.1:60173-61684:- | gene-YLL036C_PE2H4 | rna-NM_001181856.1_PE2H4 | cds-NP_013064.1_PE2H4 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001144.5:66745-68256:- | gene-YLL036C_S288C | rna-NM_001181856.1_S288C | cds-NP_013064.1_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000047.1:60266-61777:- | gene-YLL036C_SA1 | rna-NM_001181856.1_SA1 | cds-NP_013064.1_SA1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005498.1:54119-55630:- | gene-YLL036C_ThermosaccDry | rna-NM_001181856.1_ThermosaccDry | cds-NP_013064.1_ThermosaccDry | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005466.1:67940-69451:- | gene-YLL036C_VR1 | rna-NM_001181856.1_VR1 | cds-NP_013064.1_VR1 | 99.4 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000023.1:53669-55180:- | gene-YLL036C_ZTW1 | rna-NM_001181856.1_ZTW1 | cds-NP_013064.1_ZTW1 | 99.2 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047498.1:62294-63805:- | gene-YLL036C_Sparadoxus | rna-NM_001181856.1_Sparadoxus | cds-NP_013064.1_Sparadoxus | 85.9 | 99.8 | Verified | 1 | 1 | 1 | False | True | False | False | False |