Gene name: PRP18
Reference locus (S288C): YGR006W
Gene biotype: protein_coding
Description: Pre-mRNA-splicing factor 18; Splicing factor and component of snRNP U5; factor involved in the positioning of the 3' splice site during the second catalytic step of splicing; interacts with Slu7p
Top 10 interactors (score): PRP8 (0.999); CDC40 (0.999); CEF1 (0.999); PRP22 (0.999); BRR2 (0.999); SLU7 (0.999); SNU114 (0.998); PRP16 (0.998); YJU2 (0.994); CWC25 (0.994); SME1 (0.993); CWC22 (0.992); SMB1 (0.991); SMD1 (0.989); PRP28 (0.988); SYF1 (0.988); CWC15 (0.986); SMD2 (0.985); SMD3 (0.983); SMX3 (0.982)
Homologues (species, bitscore): PRPF18 (Homo sapiens, 74.7); Prpf18 (Mus musculus, 74.7); prpf18 (Danio rerio, 72.8); prpf18 (Xenopus tropicalis, 79.0); Prp18 (Drosophila melanogaster, 82.0); F32B6.3 (Caenorhabditis elegans, 59.7); AT1G03140 (Arabidopsis thaliana, 80.1)
External links:
Saccharomyces genome database (SGD)
STRING database
BioGRID
UniProt Knowledgebase
Kyoto encyclopedia of genes and genomes (KEGG)
Reactome
UCSC Genome Browser
| strain | assembly | application | macro_region | gene_coord | geneID | rnaID | protID | %id | %cov_exon | status | copyNumber | copyID | nORFs | match_ref_CDS | validORF | missing_startCodon | missing_stopCodon | outOfFrame_stopCodon |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AKU4011 | GCA_001738255.1 | Sake | Asia | CM005301.1:508117-508872:+ | gene-YGR006W_AKU4011 | rna-NM_001181135.1_AKU4011 | cds-NP_011520.2_AKU4011 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| BG1 | GCA_001932575.1 | Bioethanol | South America | MSHP01000060.1:67237-67992:- | gene-YGR006W_BG1 | rna-NM_001181135.1_BG1 | cds-NP_011520.2_BG1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Bruggeman | GCA_001738585.1 | Bread | Not Applicable | CM005509.1:509086-509841:+ | gene-YGR006W_Bruggeman | rna-NM_001181135.1_Bruggeman | cds-NP_011520.2_Bruggeman | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CAT1 | GCA_001738705.1 | Bioethanol | South America | CM005525.1:507879-508634:+ | gene-YGR006W_CAT1 | rna-NM_001181135.1_CAT1 | cds-NP_011520.2_CAT1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CBS1585 | GCA_001738375.1 | Sake | Asia | CM005365.1:509610-510365:+ | gene-YGR006W_CBS1585 | rna-NM_001181135.1_CBS1585 | cds-NP_011520.2_CBS1585 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| CBS436 | GCA_001738355.1 | Sake | Asia | CM005349.1:503973-504728:+ | gene-YGR006W_CBS436 | rna-NM_001181135.1_CBS436 | cds-NP_011520.2_CBS436 | 100.0 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6412 | GCA_001738345.1 | Sake | Asia | CM005333.1:502207-502962:+ | gene-YGR006W_CBS6412 | rna-NM_001181135.1_CBS6412 | cds-NP_011520.2_CBS6412 | 99.8 | 100.0 | Mismatch | 1 | 1 | 1 | True | True | False | False | False |
| CBS6413 | GCA_001738265.1 | Sake | Asia | CM005317.1:506283-507038:+ | gene-YGR006W_CBS6413 | rna-NM_001181135.1_CBS6413 | cds-NP_011520.2_CBS6413 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| CENPK1137D | GCA_000269885.1 | Laboratory | Not Applicable | CM001528.1:505888-506643:+ | gene-YGR006W_CENPK1137D | rna-NM_001181135.1_CENPK1137D | cds-NP_011520.2_CENPK1137D | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| EthanolRed | GCA_001738615.1 | Bioethanol | Asia | CM005477.1:496488-497243:+ | gene-YGR006W_EthanolRed | rna-NM_001181135.1_EthanolRed | cds-NP_011520.2_EthanolRed | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| FaliES1 | GCA_001738715.1 | Bioethanol | Asia | CM005541.1:499738-500493:+ | gene-YGR006W_FaliES1 | rna-NM_001181135.1_FaliES1 | cds-NP_011520.2_FaliES1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| JAY291 | GCA_000182315.2 | Bioethanol | South America | ACFL01000020.1:38372-39127:+ | gene-YGR006W_JAY291 | rna-NM_001181135.1_JAY291 | cds-NP_011520.2_JAY291 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30387 | GCA_001738515.1 | Bread | Europe | CM005413.1:506308-507063:+ | gene-YGR006W_MUCL30387 | rna-NM_001181135.1_MUCL30387 | cds-NP_011520.2_MUCL30387 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL30388 | GCA_001738495.1 | Bread | Europe | CM005445.1:508859-509614:+ | gene-YGR006W_MUCL30388 | rna-NM_001181135.1_MUCL30388 | cds-NP_011520.2_MUCL30388 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| MUCL39482 | GCA_001738235.1 | Sake | Asia | CM005285.1:505429-506184:+ | gene-YGR006W_MUCL39482 | rna-NM_001181135.1_MUCL39482 | cds-NP_011520.2_MUCL39482 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| MUCL42920 | GCA_001738485.1 | Bread | Europe | CM005429.1:514860-515615:+ | gene-YGR006W_MUCL42920 | rna-NM_001181135.1_MUCL42920 | cds-NP_011520.2_MUCL42920 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| NCIM3186 | GCA_001029075.1 | Bioethanol | Asia | CP011816.1:506070-506825:+ | gene-YGR006W_NCIM3186 | rna-NM_001181135.1_NCIM3186 | cds-NP_011520.2_NCIM3186 | 99.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |
| NCYC1407 | GCA_001738225.1 | Sake | Asia | CM005269.1:499470-500225:+ | gene-YGR006W_NCYC1407 | rna-NM_001181135.1_NCYC1407 | cds-NP_011520.2_NCYC1407 | 99.8 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H3 | GCA_905220325.1 | Bioethanol | South America | HG994146.1:502140-502895:+ | gene-YGR006W_PE2H3 | rna-NM_001181135.1_PE2H3 | cds-NP_011520.2_PE2H3 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| PE2H4 | GCA_905220315.1 | Bioethanol | South America | LR999878.1:507190-507945:+ | gene-YGR006W_PE2H4 | rna-NM_001181135.1_PE2H4 | cds-NP_011520.2_PE2H4 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| S288C | GCF_000146045.2 | Laboratory | Not applicable | NC_001139.9:506070-506825:+ | gene-YGR006W_S288C | rna-NM_001181135.1_S288C | cds-NP_011520.2_S288C | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| SA1 | GCA_004114265.1 | Bioethanol | South America | SDIA01000021.1:48762-49517:- | gene-YGR006W_SA1 | rna-NM_001181135.1_SA1 | cds-NP_011520.2_SA1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ThermosaccDry | GCA_001738605.1 | Bioethanol | Asia | CM005493.1:519064-519819:+ | gene-YGR006W_ThermosaccDry | rna-NM_001181135.1_ThermosaccDry | cds-NP_011520.2_ThermosaccDry | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| VR1 | GCA_001738595.1 | Bioethanol | South America | CM005461.1:609355-610110:+ | gene-YGR006W_VR1 | rna-NM_001181135.1_VR1 | cds-NP_011520.2_VR1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| ZTW1 | GCA_000308935.1 | Bioethanol | Asia | AMDD01000014.1:497661-498416:+ | gene-YGR006W_ZTW1 | rna-NM_001181135.1_ZTW1 | cds-NP_011520.2_ZTW1 | 100.0 | 100.0 | Verified | 1 | 1 | 1 | True | True | False | False | False |
| Sparadoxus | GCF_002079055.1 | Not applicable | Not applicable | NC_047493.1:507166-507924:+ | gene-YGR006W_Sparadoxus | rna-NM_001181135.1_Sparadoxus | cds-NP_011520.2_Sparadoxus | 87.6 | 100.0 | Verified | 1 | 1 | 1 | False | True | False | False | False |